Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_P04
         (681 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   3.1  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   7.1  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   9.3  
AF265300-1|AAG17643.1|  126|Tribolium castaneum putative cytochr...    21   9.3  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = -2

Query: 644 SAAIIPNMVKKIDLAPNVESDAAAVPEIKTPEAADAPKLADNPVDEDKPADI 489
           S +++ +M+  ++  P+ ++D + V   +TP    +    DN   E KP D+
Sbjct: 445 STSVVGDMLN-MNWNPSAQNDLSGVNLSETPSGISSLLNLDNQQLELKPIDL 495


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 126 GVENATLTHMG*FHTYTLQLISR 194
           G+  ATLT +     YT+Q++++
Sbjct: 214 GLHEATLTDLALGENYTVQIMAK 236


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +2

Query: 122 PRCRERHSHSHGVVSHIYATVNLSRWQRSTS 214
           P C + ++  +G  S + A      WQ +TS
Sbjct: 95  PDCSKGNADQNGYASVVAAAAVKDVWQSATS 125


>AF265300-1|AAG17643.1|  126|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +2

Query: 119 PPRCRERHSHSH 154
           P RC++RH +S+
Sbjct: 115 PERCQQRHYYSY 126


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,582
Number of Sequences: 336
Number of extensions: 1923
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)