Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_P02
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    26   3.5  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    26   3.5  

>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 427 QCVRVVAPGRG*ELELLVFFCQEEIAGLPPSTGD 528
           Q  R+V P  G  + L  ++C   I  L PST D
Sbjct: 306 QFPRMVVPSAGVHVVLPEYYCPPNIGILDPSTSD 339


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 210  KNLCIDYTSWCSQSVSTAVMTDLIKNIP*TMNSYF 314
            K L + + SWC Q +S  ++    KNI   M  ++
Sbjct: 949  KKLLLVHGSWCYQRLSKLILYSFYKNIALYMTQFW 983


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,142,866
Number of Sequences: 5004
Number of extensions: 39433
Number of successful extensions: 66
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)