Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_P02
         (578 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0571 - 11664292-11664809,11664900-11665750,11665837-11666468     29   2.7  
08_02_1134 - 24560403-24560816                                         28   4.7  
06_03_1416 + 30027066-30027663,30027739-30027848,30027927-300280...    28   6.2  

>02_02_0571 - 11664292-11664809,11664900-11665750,11665837-11666468
          Length = 666

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +2

Query: 266 DDRFN*KHTINNEQLFLNEKYSFVFC-PLQLISFKIIITTSSLFRF-IRYELIKL 424
           DDR   KH + N  LF+     F  C  +  ++ K ++ T + F+F + Y LIKL
Sbjct: 542 DDRVAIKHELQNYILFMRRSNEFTACYDIASLAAK-MVETETHFKFALVYRLIKL 595


>08_02_1134 - 24560403-24560816
          Length = 137

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 443 WPPGAAKN*NCWFFFVRRKSPDFRPPLGTAGRACR 547
           WP   A   +CWF  ++  +     P G AGR  R
Sbjct: 101 WPTRGAGRKHCWFSSIQHGNRGTSLPAGAAGRRVR 135


>06_03_1416 + 30027066-30027663,30027739-30027848,30027927-30028003,
            30028080-30028173,30028314-30028437,30028537-30028591,
            30028666-30028747,30028832-30028909,30028995-30029135,
            30029416-30029645,30029724-30029867,30029934-30030047,
            30030139-30030994,30031149-30031312,30031398-30031445,
            30033435-30033500,30033845-30033922,30034324-30034366
          Length = 1033

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 556  GSTPTCSARRPQWRAEVRRFP 494
            G  P+CSARRP+  A ++R P
Sbjct: 1012 GLEPSCSARRPKQEAPLQRSP 1032


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,890,762
Number of Sequences: 37544
Number of extensions: 260754
Number of successful extensions: 577
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)