Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_O24
(628 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_02_0047 + 10621234-10621422,10621512-10621574,10623049-106231... 37 0.011
11_04_0046 + 12751830-12752285,12752385-12752670,12753329-12753786 31 0.75
01_01_0612 + 4565422-4565481,4565597-4565671,4565760-4566332,456... 31 0.75
01_04_0018 + 15128174-15128316,15128445-15128544,15129573-151297... 30 1.3
04_04_1358 + 32869222-32869306,32869947-32870008,32870301-328703... 30 1.7
08_02_0043 - 11550185-11550418,11551525-11551568,11552134-115521... 28 5.3
07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856 28 5.3
01_05_0044 + 17531005-17531739,17532624-17532956,17532968-17533027 28 5.3
02_05_1273 + 35381626-35382486,35382567-35382691,35384851-353854... 27 9.2
>01_02_0047 +
10621234-10621422,10621512-10621574,10623049-10623120,
10623163-10623234,10623335-10623442,10623615-10623695,
10623780-10623833,10623921-10624046,10624139-10624345,
10624457-10624558,10624711-10624827,10624930-10625001,
10625096-10625170,10625297-10625416
Length = 485
Score = 37.1 bits (82), Expect = 0.011
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 6/108 (5%)
Frame = -2
Query: 426 YYEVY*TSIHPIRKTSTHSLKKLYPKLVKQLKKRTTRIPRSNSRMS------GRHL*RED 265
++E S IR TSTHS K L+ K+ + + ++ R NS++ G R
Sbjct: 354 FFEEEDASQRKIRFTSTHSPKDLFDKIENVVTEMGFQVQRGNSKLKVMKNGRGSKNLRNP 413
Query: 264 SLIRILSTVI*ILKLKYKTSLRMHHVECLFNRETCRLANEKLGRICNS 121
S + + V+ + Y L+ H + + R+ C +++LG +C +
Sbjct: 414 SSFLVCTEVVELGPSLYVVELKKSHGDPILYRQLCERLSDELG-VCKT 460
>11_04_0046 + 12751830-12752285,12752385-12752670,12753329-12753786
Length = 399
Score = 31.1 bits (67), Expect = 0.75
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = -1
Query: 304 EFEDVRKALIERGLIDKDTLDSHLNFEIKIQNKFKDAPRGMPFQSRNMPFGQRKIRKD 131
E E+ R+ I K+ + + IKI+ KFK + + F SR FG RK+R+D
Sbjct: 193 ELEEWREKAYHNVRIYKERTNRWHDKRIKIK-KFKPGDKVLMFNSRVKIFGHRKLRRD 249
>01_01_0612 +
4565422-4565481,4565597-4565671,4565760-4566332,
4566438-4566551,4566676-4567377
Length = 507
Score = 31.1 bits (67), Expect = 0.75
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Frame = -1
Query: 544 GAPHIALESISGQRQHYITI-RNIKAM--ALADMGRVDDAIPILRSVLNIDSPDQKDKHT 374
GAP I ES + Q TI + + M A A+MG V + L+++L D K HT
Sbjct: 23 GAPPIVFESFAPSTQRDSTIIKKEEKMEAAKAEMGEVREENERLKTMLTRIVSDYKSLHT 82
Query: 373 FFEETISKVGEAVEKTNNKDTKIEFEDV 290
F + + + + + D E +D+
Sbjct: 83 HFLDVVKVKEQTAAELSGDDDDDEPDDL 110
>01_04_0018 +
15128174-15128316,15128445-15128544,15129573-15129758,
15129877-15129924,15130006-15130209,15130476-15130565,
15130667-15130747,15130827-15130889,15131794-15131832,
15131914-15132000,15132103-15132252,15132331-15132386,
15132493-15132775,15132989-15133132,15133233-15133451,
15133528-15133695,15133868-15133969
Length = 720
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = -1
Query: 367 EETISKVGEAVEKTNNKDTKIEFEDVRKALIERGLIDKDTLDSH 236
+E++ KV + + ++KD +EF RK L R L DK+T D H
Sbjct: 392 DESLEKVVKLLTYLSDKDLFVEFH--RKKLGRRLLFDKNTNDEH 433
>04_04_1358 + 32869222-32869306,32869947-32870008,32870301-32870393,
32870640-32870761,32873139-32873167,32873586-32873891,
32873977-32874035,32874148-32874279,32874414-32874455,
32874560-32875093,32875189-32875379,32875538-32876027,
32876273-32876335,32876704-32876805,32876895-32877215,
32877294-32877386,32877484-32877585,32877718-32877822,
32877933-32878066,32878429-32878612,32879226-32879357,
32879447-32879559,32879628-32879709,32880328-32881992
Length = 1746
Score = 29.9 bits (64), Expect = 1.7
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Frame = -1
Query: 499 HYITIRNIKAMALADMGRVDD----------AIPILRSVLNIDSPDQKDKHTFFEETISK 350
H + IR+ K + A + VDD + IL ++S + D H+
Sbjct: 786 HEMVIRSFKHIVRAVIAAVDDMQNMSAAIAETLNILLGCPRLESGTETDAHSEHNLRFRW 845
Query: 349 VGEAVEKTNNKDTKIEFEDVRKALIERGLIDKDTLD 242
V + K N K EF +RK +I RGL K L+
Sbjct: 846 VERFLSKRYNWKLKDEFAHLRKFIILRGLCSKVGLE 881
>08_02_0043 -
11550185-11550418,11551525-11551568,11552134-11552185,
11552911-11553111,11553462-11553539,11553887-11554155,
11554241-11554300,11554433-11554547,11554651-11554710,
11554824-11555002,11555250-11555319,11555838-11555987,
11556108-11556287,11556366-11556449
Length = 591
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -1
Query: 463 LADMG-RVDDAIPILRSVLNIDSPDQKDKHTFFEETISKV 347
L D G +V A+ +LR VL IDS + + F EET+ K+
Sbjct: 476 LPDHGEQVLSALNLLRFVLIIDSRGSRSRKMFGEETMRKI 515
>07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856
Length = 1494
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 351 KLVKQLKKRTTRIPRSNSRMSGRHL 277
K +++LK+RT I NSR S HL
Sbjct: 636 KQIQELKRRTMNISARNSRYSANHL 660
>01_05_0044 + 17531005-17531739,17532624-17532956,17532968-17533027
Length = 375
Score = 28.3 bits (60), Expect = 5.3
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -1
Query: 304 EFEDVRKALIERGLIDKDTLDSHLNFEIKIQNKFKDAPRGMPFQSRNMPFGQRKIR 137
E E+ R+ I K+ + IKI+ KFK + + F SR FG RK+R
Sbjct: 162 ELEEWREKAYHNAKIYKERTKRWHDKRIKIK-KFKPGDKVLMFNSRVKLFGHRKLR 216
>02_05_1273 +
35381626-35382486,35382567-35382691,35384851-35385450,
35385550-35385841,35386199-35386364,35386664-35386707,
35386866-35386979,35387171-35387290,35387541-35387626,
35388340-35388502
Length = 856
Score = 27.5 bits (58), Expect = 9.2
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Frame = -1
Query: 538 PHIALESISGQRQ-HYI-TIRNIKAMALADMGRVDDAIPILRSVLNIDSPDQKDKHTFFE 365
P +A + RQ H + T+R+ A++ D+ R D ++ VL D P Q +
Sbjct: 309 PSVAARELGQLRQSHRVSTLRSESAVSSEDVSRFDSSVAESVGVLGSDEPQQGAEVRALT 368
Query: 364 ETISKVGEAVEKTNNKDTKIEFEDVRKALIERGLIDKDTL-DSHLNFEIKIQNKFKD 197
T E + +D ++ D A IE + D + + H E ++ N+ +D
Sbjct: 369 GT-----ENTTQIMLEDVGLQEADAENAAIESPSVALDNMVEMH---ETQVDNRLQD 417
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,854,671
Number of Sequences: 37544
Number of extensions: 317384
Number of successful extensions: 802
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -