Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_O24
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-6|AAK29909.1|  191|Caenorhabditis elegans Hypothetical ...    35   0.055
U29378-4|AAA68727.2|  667|Caenorhabditis elegans Temporarily ass...    29   2.7  
U00053-1|AAZ94293.1|  548|Caenorhabditis elegans Acetylcholine r...    28   6.3  

>AC025721-6|AAK29909.1|  191|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.7 protein.
          Length = 191

 Score = 34.7 bits (76), Expect = 0.055
 Identities = 22/100 (22%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
 Frame = -1

Query: 481 NIKAMALADMGRVDDAIPILRSVLNIDSP-DQKDKHTFFEETISKVGEAVEKTNNKDTKI 305
           +I+  ALA+  ++D+A+  L  VL  +        ++  +E +  + EA++       K+
Sbjct: 65  SIRIKALAEQSKLDEALLELEKVLMFEEEVFSSGNYSVSDEALDSLCEAIKSAPETTEKM 124

Query: 304 -EFEDVRKALIERGLIDKDTLDSHLNFEIKIQNKFKDAPR 188
            +F ++++ + + G   K T++  L   I ++ +  +APR
Sbjct: 125 KKFRNLQRIITKYGRRTKKTIEELLFSPIHLEQQPDEAPR 164


>U29378-4|AAA68727.2|  667|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 197 protein.
          Length = 667

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
 Frame = -1

Query: 442 DDAIPILRSVLNIDSPDQKDKHTFFEETISKVGEAVEKTNNKDTKIEFEDVRKALIERGL 263
           +D+I  L + ++     QK+KH F       +   ++   +K TKI +  V +  +E+  
Sbjct: 484 EDSIEQLLTRMSAMQQTQKNKHVFLINNYDLILSIIDNEESKHTKI-YAIVHE--LEQKS 540

Query: 262 ID---KDTLDSHLNFEIKIQNK 206
           ID   ++ L+ H+ + IK  N+
Sbjct: 541 IDDFVEEMLEPHIGYMIKFVNE 562


>U00053-1|AAZ94293.1|  548|Caenorhabditis elegans Acetylcholine
           receptor protein 5 protein.
          Length = 548

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 624 YGQIWLXREH-YHSEERRLLLLDSH*NRELLTSPWNQ 517
           Y QIW+   + Y+SEE      +S  N +L T  WNQ
Sbjct: 184 YHQIWIPDTYLYNSEELEQKKTESLMNAQLETGHWNQ 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,376,218
Number of Sequences: 27780
Number of extensions: 307731
Number of successful extensions: 892
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)