Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_O20
(438 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0790 - 21214282-21214369,21214455-21214564,21215478-212155... 121 3e-28
08_01_0372 + 3286861-3286939,3287220-3287299,3289041-3289150,328... 121 3e-28
09_04_0106 - 14636773-14636863,14636948-14637057,14638107-146381... 120 7e-28
03_05_0642 - 26346260-26346367,26347902-26348162,26348542-263498... 29 2.2
12_02_0035 - 12563503-12564405,12564494-12565611,12565709-125662... 28 2.9
12_02_0010 - 12275652-12276221,12276804-12276935 28 3.8
08_02_1209 - 25311892-25312170,25312254-25312483,25313081-25313426 27 5.0
01_05_0589 + 23459847-23460344,23460493-23461296 27 5.0
02_05_0798 - 31810579-31811516,31811646-31811666,31811715-31812225 27 6.6
11_01_0174 + 1394229-1394346,1394695-1394891,1394972-1395052,139... 27 8.7
04_04_1557 + 34411215-34411571,34411676-34411831 27 8.7
02_05_1325 - 35708046-35708207,35708297-35708374,35708466-357085... 27 8.7
>08_02_0790 -
21214282-21214369,21214455-21214564,21215478-21215557,
21215659-21215737
Length = 118
Score = 121 bits (291), Expect = 3e-28
Identities = 60/101 (59%), Positives = 74/101 (73%), Gaps = 2/101 (1%)
Frame = -1
Query: 381 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 202
MVQRLT+R+R SY TKSNQ R+V+TPGGRLVYQY KK P+C K++GI RPA
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGRLVYQYTKKRASGPKCPVTGKKIQGIPHLRPA 60
Query: 201 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEERK 85
E RSRL ++TV R YGGVL V++RI+RAFL+EE+K
Sbjct: 61 EYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEEQK 101
>08_01_0372 +
3286861-3286939,3287220-3287299,3289041-3289150,
3289224-3289311
Length = 118
Score = 121 bits (291), Expect = 3e-28
Identities = 60/101 (59%), Positives = 74/101 (73%), Gaps = 2/101 (1%)
Frame = -1
Query: 381 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 202
MVQRLT+R+R SY TKSNQ R+V+TPGGRLVYQY KK P+C K++GI RPA
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGRLVYQYTKKRASGPKCPVTGKKIQGIPHLRPA 60
Query: 201 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEERK 85
E RSRL ++TV R YGGVL V++RI+RAFL+EE+K
Sbjct: 61 EYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEEQK 101
>09_04_0106 -
14636773-14636863,14636948-14637057,14638107-14638186,
14638302-14638380
Length = 119
Score = 120 bits (288), Expect = 7e-28
Identities = 59/101 (58%), Positives = 74/101 (73%), Gaps = 2/101 (1%)
Frame = -1
Query: 381 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 202
MVQRLT+R+R SY TKSNQ R+V+TPGG+LVYQY KK P+C K++GI RPA
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRPA 60
Query: 201 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEERK 85
E RSRL ++TV R YGGVL V++RI+RAFL+EE+K
Sbjct: 61 EYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEEQK 101
>03_05_0642 - 26346260-26346367,26347902-26348162,26348542-26349849,
26349960-26350178,26350241-26350300,26352159-26352215,
26352945-26353029,26353486-26353843,26353931-26355170
Length = 1231
Score = 28.7 bits (61), Expect = 2.2
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -1
Query: 348 SYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERS 193
S N NQ+R+V+ G + +KP+++ + KL+G RP R+
Sbjct: 1123 SNNQSQNQQRLVQVGGKQGAA--TQKPQRLSNARPAREKLKGDNAKRPGSRT 1172
>12_02_0035 - 12563503-12564405,12564494-12565611,12565709-12566239,
12566337-12567153
Length = 1122
Score = 28.3 bits (60), Expect = 2.9
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = -3
Query: 418 MLSLSPAVKKLENGAAAYIQATTVVQHKIKSKKNSKDTGWPLGLSVCQKAQEDPKVWSMQ 239
ML+ +L + A ++A V+ K KK +DT L S+ +++ P WS Q
Sbjct: 1053 MLNDEAKYAQLRDAAQPVVKAFQVLYWK---KKGYEDTLRSLRASLASRSKSQPASWSQQ 1109
Query: 238 EQTPWYPAS 212
++ P+S
Sbjct: 1110 DKDSSTPSS 1118
>12_02_0010 - 12275652-12276221,12276804-12276935
Length = 233
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -1
Query: 420 RCFPCHQLSKSLKMVQRLTFRRRLSYNTKSNQRRIVRTP 304
RC P H L LK R RR+S + ++ VR+P
Sbjct: 47 RCQPAHTLGPPLKRHIRSKSGRRVSSQLQPKEKEAVRSP 85
>08_02_1209 - 25311892-25312170,25312254-25312483,25313081-25313426
Length = 284
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 241 ALTTPWDLLGLFDILINQAATRCPYYSSL 327
A+ + WD G D+LIN A R +S L
Sbjct: 94 AVQSAWDAFGRIDVLINNAGLRGGVHSPL 122
>01_05_0589 + 23459847-23460344,23460493-23461296
Length = 433
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 188 RRERSAGLAGWIPRSLLLH*PHLGIFL 268
R +R + GW P+ L+L+ P +G+F+
Sbjct: 286 RGDRGRTIRGWAPQVLVLNHPAVGVFV 312
>02_05_0798 - 31810579-31811516,31811646-31811666,31811715-31812225
Length = 489
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 185 QRRERSAGLAGWIPRSLLLH*PHLGIFL 268
+ +ER LA W P+ L+L P +G+FL
Sbjct: 354 ETKERGV-LASWCPQELVLSHPSVGLFL 380
>11_01_0174 +
1394229-1394346,1394695-1394891,1394972-1395052,
1395184-1395393,1395531-1395608,1395682-1395990
Length = 330
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 138 HKCVKQRIVRAFLIEERKNCEGSARHNRRAL 46
H ++R V++ L+EE + SAR RRAL
Sbjct: 268 HSRTRRRGVKSELVEENERAGPSARMTRRAL 298
>04_04_1557 + 34411215-34411571,34411676-34411831
Length = 170
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -1
Query: 270 PKKIPRCGQCKSKLRGIQPARPAERSRLCYR 178
P +I RC + ++ ++P RP++ SRLC R
Sbjct: 138 PNRISRCLEEGAEDFLLKPVRPSDVSRLCSR 168
>02_05_1325 -
35708046-35708207,35708297-35708374,35708466-35708512,
35708731-35708839
Length = 131
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -1
Query: 270 PKKIPRCGQCKSKLRGIQPARPAERSRLCYR 178
P +I RC + ++ I+P RP++ SRLC R
Sbjct: 97 PTRIRRCLEEGAEDFLIKPVRPSDVSRLCNR 127
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,429,830
Number of Sequences: 37544
Number of extensions: 226620
Number of successful extensions: 549
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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