Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_O13
(304 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1782.07 |qcr8||ubiquinol-cytochrome-c reductase complex subu... 44 5e-06
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 28 0.26
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |... 27 0.61
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 25 2.4
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 25 3.2
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 25 3.2
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 25 3.2
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 25 3.2
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 24 4.3
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 24 4.3
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc... 24 4.3
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 24 4.3
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha... 24 5.6
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 24 5.6
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 24 5.6
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo... 24 5.6
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p... 24 5.6
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 23 7.5
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 23 9.9
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 23 9.9
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 23 9.9
>SPAC1782.07 |qcr8||ubiquinol-cytochrome-c reductase complex subunit
7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 92
Score = 44.0 bits (99), Expect = 5e-06
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = -2
Query: 204 KIRGLVTYKISAHEQRAYAGAISNGIPNIFRRFRESVFKVAPPFIIGYLIY-EGVEREQ 31
K +G++TY +S +QR AG N+FRR VA PF I Y IY G ER +
Sbjct: 21 KQKGIITYSLSPFQQRPMAGFFKTSTQNMFRRVMTEGLYVAIPFGIAYYIYCWGKERNE 79
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 28.3 bits (60), Expect = 0.26
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -2
Query: 153 YAGAISNGIPNIFRRFRESVFKVAPPFIIGYLIYEGVER 37
Y + G +++ ++ KVAP I YL+YE ++
Sbjct: 383 YKTTKNEGFRGLYKGLSPNLLKVAPSVAISYLVYENCKK 421
>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 27.1 bits (57), Expect = 0.61
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 9 VLPCLVCAAPFQLLHISSI 65
V PCL+CAA + LHI ++
Sbjct: 271 VEPCLMCAAALKQLHIKAV 289
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 25.0 bits (52), Expect = 2.4
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = -2
Query: 168 HEQRAYAGAISNGIPNIFRRFRESVFKVAPPFIIGYLIYEGVERE 34
H R Y SNG+ I F+ +FK A I L + + RE
Sbjct: 345 HSTRTYVEQFSNGVTIISYNFKPELFKNAAVTSINEL-FSQITRE 388
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 24.6 bits (51), Expect = 3.2
Identities = 15/61 (24%), Positives = 26/61 (42%)
Frame = -2
Query: 225 KHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRRFRESVFKVAPPFIIGYLIYEG 46
+ G++ L TYK+ GA+ G+P+ + + V +G LIY+
Sbjct: 20 REHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKV 79
Query: 45 V 43
V
Sbjct: 80 V 80
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 24.6 bits (51), Expect = 3.2
Identities = 15/61 (24%), Positives = 26/61 (42%)
Frame = -2
Query: 225 KHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRRFRESVFKVAPPFIIGYLIYEG 46
+ G++ L TYK+ GA+ G+P+ + + V +G LIY+
Sbjct: 20 REHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKV 79
Query: 45 V 43
V
Sbjct: 80 V 80
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 24.6 bits (51), Expect = 3.2
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 219 FGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIF 115
FG++ ++R + +K +AH A IS G+ N F
Sbjct: 41 FGKVVQLRSFIPFKNAAHALE-NANDISEGVLNDF 74
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 24.6 bits (51), Expect = 3.2
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 211 FSKVFAHSGELLTSKFCNKILRNIIGRPNS 300
+S F+H G N LR +GRP+S
Sbjct: 86 YSLTFSHEGGPYIGSLANFGLRQTLGRPSS 115
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 24.2 bits (50), Expect = 4.3
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = -3
Query: 302 NEFGRPMILRKILLQNLEVRSSPLWANTLE 213
N+FG +I RKI+++++ +R+ +N E
Sbjct: 603 NQFGFSLIDRKIMVEDIRIRAIARASNQSE 632
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 24.2 bits (50), Expect = 4.3
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 293 GRPMILRKILLQNLEVRSSPLW 228
G+ +L IL QNL RS P W
Sbjct: 641 GKNDLLNAILSQNLWFRSLPFW 662
>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 24.2 bits (50), Expect = 4.3
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = -2
Query: 237 TTMGKHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRR 109
T GKHF ELA G ++ +Q+ + +G + +R
Sbjct: 288 TVFGKHFQELANDYGDNLVVVNLLDQKGREAPLRSGFEKLCKR 330
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 24.2 bits (50), Expect = 4.3
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Frame = +2
Query: 2 QPGXSVSRLCCSLSTPS--YIKYPMMKG-----GATLKTLSRNLLKILGIPFEIAP 148
+P S++ L +L S YI Y +++G GA L+ ++ L K+LG F+ P
Sbjct: 497 EPASSMTLLASNLPKASNFYISYFLLQGLSIPGGALLQIVTLLLSKVLGRIFDNTP 552
>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 23.8 bits (49), Expect = 5.6
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -2
Query: 138 SNGIPNIFRRFRESVFKVAPPFIIGYLIYEGVER 37
S G+ +FR F +F + + ++ YEG+ R
Sbjct: 294 SEGLLGLFRGFGPRIFWTSSQSSLMFVFYEGIIR 327
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 23.8 bits (49), Expect = 5.6
Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Frame = +2
Query: 104 RNLLKILGIPFEIAP--AYARCS 166
+ LL++ G+P+ +AP A A+CS
Sbjct: 761 QELLRLFGLPYIVAPQEAEAQCS 783
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 23.8 bits (49), Expect = 5.6
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -3
Query: 119 SSEDFVRAFLK*PRPSSLDT*YMKELKGSSTDETRKXPA 3
SS DFV K PR S T + + GSS+ K A
Sbjct: 1219 SSRDFVNRTKKKPRGKSTGTRKPRAIAGSSSSTAVKKEA 1257
>SPAC3A12.17c |cys12|cys1b|cysteine synthase
Cys12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 395
Score = 23.8 bits (49), Expect = 5.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 8 GXSVSRLCCSLSTPSYIKYP 67
G S++ LCCSL S I P
Sbjct: 117 GISIAMLCCSLGYDSRIYMP 136
>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 669
Score = 23.8 bits (49), Expect = 5.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 34 LPFNSFIYQVSNDEGR 81
L FNS+I V+ DEGR
Sbjct: 304 LNFNSYIKPVAGDEGR 319
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 23.4 bits (48), Expect = 7.5
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 28 VLLPFNSFIYQVSNDEGRGYFKNAL 102
VLL + Y V NDE Y + AL
Sbjct: 633 VLLDLDGLQYLVKNDEDYSYLQEAL 657
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 23.0 bits (47), Expect = 9.9
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = -3
Query: 191 LSPTRYLPMNNEHMLELFQMVFLISSEDFVRAFLK 87
L P+ ++PMN L L +F+I+ F +
Sbjct: 525 LIPSSFVPMNRNIFLLLISSLFIIAGNTGFPCFFR 559
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 23.0 bits (47), Expect = 9.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 67 NDEGRGYFKNALTKSSEDIRNTI 135
N+E Y+ NA ++ SED N I
Sbjct: 18 NEEDDDYYSNAHSEKSEDHSNHI 40
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 23.0 bits (47), Expect = 9.9
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 217 KVFAHSGELLTSKFCNKILRNII 285
K++ HSG +L FC + RN++
Sbjct: 256 KLYGHSGSVLCLDFCRR--RNLL 276
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,285,136
Number of Sequences: 5004
Number of extensions: 24638
Number of successful extensions: 73
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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