Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_O13
(304 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_1041 - 10711362-10711428,10711571-10712262,10712622-107127... 30 0.40
05_07_0042 - 27265687-27267159 29 0.70
11_01_0375 - 2855714-2855914,2856009-2856161,2856644-2856775,285... 28 1.2
01_05_0225 - 19501643-19501903,19503974-19504477 28 1.2
01_06_0624 - 30683249-30684631 28 1.6
02_05_0959 + 33086498-33086544,33087295-33087967,33088665-330890... 27 2.1
06_01_0779 - 5823389-5823787 27 2.8
12_02_0979 - 25009721-25009975,25010058-25010127,25010216-250103... 27 3.7
01_03_0246 - 14207899-14208052,14208132-14208206,14208682-142088... 26 4.9
11_01_0431 + 3308001-3308124,3308209-3308366,3311285-3311794 26 6.5
09_04_0528 - 18348071-18348136,18348477-18351209 26 6.5
02_01_0148 - 1051121-1051192,1051378-1051512,1052343-1052396,105... 26 6.5
09_04_0608 + 18924648-18924899,18926341-18926435,18926903-189272... 25 8.6
07_01_0206 + 1484107-1484583 25 8.6
06_03_0691 + 23552437-23552914,23555168-23555953,23556045-235561... 25 8.6
>12_01_1041 -
10711362-10711428,10711571-10712262,10712622-10712777,
10712885-10713957,10714422-10714524,10714694-10714876,
10715007-10715099,10715379-10715564,10716530-10716793
Length = 938
Score = 29.9 bits (64), Expect = 0.40
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 82 GYFKNALTKSSEDIRNTI*NSSSICSLFMGRYLVGDKTPNFS 207
G+F N L + R+ + N+ SI SL Y +G P+F+
Sbjct: 310 GFFANTLKRHGRGERSDVGNNDSIESLLDPEYALGKDAPDFT 351
>05_07_0042 - 27265687-27267159
Length = 490
Score = 29.1 bits (62), Expect = 0.70
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 110 LLKILGIPFEIAPAYARCSWADIL 181
++ ++ +PF + P YA+C W D L
Sbjct: 178 VMAMVELPFMVRPEYAQCLWGDTL 201
>11_01_0375 -
2855714-2855914,2856009-2856161,2856644-2856775,
2856875-2857071,2858506-2858590
Length = 255
Score = 28.3 bits (60), Expect = 1.2
Identities = 19/60 (31%), Positives = 32/60 (53%)
Frame = +1
Query: 16 RVSSVLLPFNSFIYQVSNDEGRGYFKNALTKSSEDIRNTI*NSSSICSLFMGRYLVGDKT 195
++++ L+ F + Y++ +GY ++ LTK D+ TI C LF RY +G KT
Sbjct: 156 KITATLIKFMTLSYELWAQISQGYRQSVLTKPLCDM--TIAALIVNCVLFAARY-IGPKT 212
>01_05_0225 - 19501643-19501903,19503974-19504477
Length = 254
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 22 SSVLLPFNSFIYQVSNDEGRGYFKNALTKSSEDIRNTI 135
+S LLP+ + VSN+E + + KSS+D R +I
Sbjct: 157 ASPLLPWRDSLVMVSNEEYKSVEHRVVIKSSQDARVSI 194
>01_06_0624 - 30683249-30684631
Length = 460
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +2
Query: 32 CSLSTPSYIKYPMMKGGATLKTLSRNLLKILGI 130
C+ + SY+ P+M+ + + R+LL+I G+
Sbjct: 121 CASALASYLHIPVMRSAVSFGQMGRSLLRIPGV 153
>02_05_0959 +
33086498-33086544,33087295-33087967,33088665-33089058,
33089140-33089210,33089373-33089497,33089705-33089821,
33094128-33094238,33094321-33094413,33094726-33094984,
33095067-33095189
Length = 670
Score = 27.5 bits (58), Expect = 2.1
Identities = 26/82 (31%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Frame = +1
Query: 1 SAGXFRVSSVLLPFNS-FIYQVSNDEGRGYFKNALTKSSEDIRNTI*NSSSICSLFMGRY 177
+A F S+ PF S + VS + RG SE ++ NS F R
Sbjct: 47 NAAEFVPSTFRSPFGSRTVADVSKPDFRGLSGKTNLGRSESSKSN--NSDDETHQFWHRQ 104
Query: 178 LVGDKTPNFS*FSKVFAHSGEL 243
L D P+FS KV GEL
Sbjct: 105 LPDDIIPDFSDMEKVEQQHGEL 126
>06_01_0779 - 5823389-5823787
Length = 132
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 119 ILGIPFEIAPAYARCSWADIL*VTRPRILASSP 217
+LGIP +RC W VT PR++ S+P
Sbjct: 67 VLGIP--ATTTASRCCWTSWWIVTAPRMMLSAP 97
>12_02_0979 -
25009721-25009975,25010058-25010127,25010216-25010381,
25010501-25010651,25010843-25010890,25011172-25011225,
25011400-25011513,25012666-25012782,25012899-25012991,
25013085-25013123,25013990-25014055
Length = 390
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 186 TYKISAHEQRAYAGAISNGIPNIFRRFRESVFKV 85
TYK+SAH + Y + I RRF+ F+V
Sbjct: 323 TYKLSAHLRHNYLTVFTIAALEILRRFQWVFFRV 356
>01_03_0246 -
14207899-14208052,14208132-14208206,14208682-14208801,
14208905-14208981,14209204-14209285,14209439-14209485,
14209561-14209681,14210188-14210235,14210478-14210569,
14211001-14211057,14211203-14211273,14211376-14211493,
14211574-14211621
Length = 369
Score = 26.2 bits (55), Expect = 4.9
Identities = 7/16 (43%), Positives = 13/16 (81%)
Frame = -2
Query: 75 FIIGYLIYEGVEREQH 28
F+IGYL++ G +++H
Sbjct: 251 FVIGYLVFRGANKQKH 266
>11_01_0431 + 3308001-3308124,3308209-3308366,3311285-3311794
Length = 263
Score = 25.8 bits (54), Expect = 6.5
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 127 NTI*NSSSICSLFMGRYLVG-DKTPNFS*FSKVFAHSGELLT 249
N + N + +L L+G D N F+K AH GE+LT
Sbjct: 74 NPVQNEKELFNLRHSSRLIGQDHKANADYFNKPLAHYGEMLT 115
>09_04_0528 - 18348071-18348136,18348477-18351209
Length = 932
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +1
Query: 40 FNSFIYQVSNDEGRGYFKNALTKSSEDIRNTI*NSSSICSLFMGRYLVGDK 192
+N I +V N+E + L S + + N + N C++F Y++ K
Sbjct: 409 YNQLISEVHNNENLNRVEKILNLSYKHLPNYLKNCFLYCAMFPEDYIIQRK 459
>02_01_0148 -
1051121-1051192,1051378-1051512,1052343-1052396,
1052501-1052581,1052667-1052826,1053346-1053453,
1053543-1053718,1053952-1054002,1054154-1054264,
1054493-1054547,1055667-1055789,1055922-1056007,
1056235-1056349,1056429-1056667
Length = 521
Score = 25.8 bits (54), Expect = 6.5
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = +2
Query: 74 KGGATLKTLSRNLLKILGI----PFEIAPAYARCSWA 172
K G L+ S L ++ G+ P EI+PAY WA
Sbjct: 36 KSGRRLEVYSEVLARLRGLGAAAPVEISPAYEDALWA 72
>09_04_0608 +
18924648-18924899,18926341-18926435,18926903-18927236,
18927345-18927582,18927813-18928069
Length = 391
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -2
Query: 195 GLVTYKISAHEQRAYAGAISN-GIPNIFRRFRESVFKVAPPFIIGYLIYE 49
G + K H A A I G+P ++R + S KV P I ++ YE
Sbjct: 327 GALQGKCPPHMIAALAEVIQEEGLPGLYRGWGASCLKVMPNSGITWMFYE 376
>07_01_0206 + 1484107-1484583
Length = 158
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -1
Query: 280 YYVRFYCKI*KLEVHHYGQTLWR 212
YY YC +L HY Q +WR
Sbjct: 99 YYDSNYCSAGELGCTHYTQVVWR 121
>06_03_0691 +
23552437-23552914,23555168-23555953,23556045-23556135,
23556214-23556406
Length = 515
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = -2
Query: 132 GIPNIFRRFRESVFKVAPPFIIGYLIYEGVER 37
G+ ++ ++ KV P I YL+YE +++
Sbjct: 479 GVSGFYKGILPNLLKVVPAASITYLVYEAMKK 510
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,208,847
Number of Sequences: 37544
Number of extensions: 150963
Number of successful extensions: 341
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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