Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_O13
         (304 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    24   0.47 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   2.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   5.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   5.8  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    20   5.8  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    20   7.7  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.8 bits (49), Expect = 0.47
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +2

Query: 110 LLKILGIPFEIAPAYARCSWADIL*VTRPRILASSPKCLPIVVNF*LLNFAIKSYV 277
           L  ILG+PFE++  + +  W   L + + R   S       V+   ++ F+I+ Y+
Sbjct: 81  LFLILGLPFELSVFWQQYPWQWGLGICKLRAYVSETSSYVSVLT--IVAFSIERYL 134


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 9/37 (24%), Positives = 21/37 (56%)
 Frame = +1

Query: 13  FRVSSVLLPFNSFIYQVSNDEGRGYFKNALTKSSEDI 123
           +R+ +  +  N+FI  ++ D G+G   +A    S+++
Sbjct: 177 YRLRAEDINMNTFIANIAVDLGKGGCNDAFAYMSDEL 213


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 10/38 (26%), Positives = 16/38 (42%)
 Frame = +2

Query: 23  RLCCSLSTPSYIKYPMMKGGATLKTLSRNLLKILGIPF 136
           R+   L  PS+  YP ++G      L    L +  + F
Sbjct: 163 RVVSWLQEPSFYIYPSLQGDGKFHLLPTGELLVHSLEF 200


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 10/38 (26%), Positives = 16/38 (42%)
 Frame = +2

Query: 23  RLCCSLSTPSYIKYPMMKGGATLKTLSRNLLKILGIPF 136
           R+   L  PS+  YP ++G      L    L +  + F
Sbjct: 163 RVVSWLQEPSFYIYPSLQGDGKFHLLPTGELLVHSLEF 200


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 11/63 (17%), Positives = 25/63 (39%)
 Frame = -3

Query: 284 MILRKILLQNLEVRSSPLWANTLEN*LKFGVLSPTRYLPMNNEHMLELFQMVFLISSEDF 105
           ++  +IL   + V     + N         +    ++LP+    + E+F    +  S+  
Sbjct: 164 LVREEILFDTVHVTFKLTFDNRAFTQASLAMTREEKHLPIGASVLFEIFPFCIVFGSDMI 223

Query: 104 VRA 96
           VR+
Sbjct: 224 VRS 226


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +1

Query: 214 SKVFAHSGELLTSKFCNKILRNIIG 288
           +KV    GEL+    C K L    G
Sbjct: 87  TKVMVEHGELVMGILCKKTLGTSAG 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,279
Number of Sequences: 438
Number of extensions: 1402
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6368931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)