Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_O09
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    29   0.87 
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    28   2.0  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    27   2.7  
SPCC338.02 |mug112||sequence orphan|Schizosaccharomyces pombe|ch...    27   2.7  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   2.7  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    27   3.5  
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    27   3.5  
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|...    27   4.7  
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit...    26   6.1  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   8.1  

>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = -3

Query: 570 EAVFDTLERI-FSIDPDNVEGLKMR-IYLALGKRSDYIEAADQLNRFFGILEIEESHNGH 397
           ++V D LE+I F    +++  LK++ IY       D I+   +   FF  L   + H GH
Sbjct: 391 DSVTDGLEKIQFDCFEEDILSLKIKTIY------PDIIKLEQKEKLFFSFLSYIDQHTGH 444

Query: 396 QFYY 385
           QF Y
Sbjct: 445 QFDY 448


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 267 LH*DSQHYLNTFLKHTGQIYKLETK-LHLTSHKF*KRFEQYSKTDVHY 407
           LH +S  +L  FL H   I  + +  +H TS  F KRF+ Y+K  + Y
Sbjct: 11  LHNNSAEHLR-FLSHRIFIGPIPSNFIHSTSGFFNKRFQNYTKRQICY 57


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = -3

Query: 414 ESHNGHQFYYTAQIFSRICGRSSAVLSQAYRFAQYASEMYSNNVDYLSEVGYQCILQAK 238
           ES N      T Q++  + G +++V S+ Y    Y  E   +   YL+E GY CI   K
Sbjct: 75  ESINAEANVITKQLY--LLGTNTSVFSEDYLSNAYRWETSFHQ--YLAEYGYPCIRDEK 129


>SPCC338.02 |mug112||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 125

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 199 FTCSSKETQCVFIFCLKDTLVANFTE 276
           + CS KET+C+ +    ++L   FTE
Sbjct: 70  YRCSLKETKCIDVIVSHNSLAPQFTE 95


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 29/142 (20%), Positives = 59/142 (41%), Gaps = 5/142 (3%)
 Frame = -3

Query: 771  STIECLEAAIRKSDNSIEXXXXXXXXXXXANDYDASNLTLDRLIINNSGQVVPLVEKMKN 592
            S + C E  I+K   + +           +  Y++  L+LD  IIN++ +      KM N
Sbjct: 1465 SALSCYEIIIQKDPENKKAKIGLLNSMLQSGHYESLVLSLDSFIINDNHE----YSKMLN 1520

Query: 591  EFAMQKWEAV-FDTLERIFSIDPDNVEGLKMR---IYLALGKRSDYIEAADQLNRFFGIL 424
                  W ++  D+L++  S    N+E  + +   I+    ++  + E  ++L   +   
Sbjct: 1521 LGIEASWRSLSIDSLKKCLS--KSNLESFEAKLGSIFYQYLRKDSFAELTERLQPLYVDA 1578

Query: 423  EIEESHNG-HQFYYTAQIFSRI 361
                ++ G H  Y    I S++
Sbjct: 1579 ATAIANTGAHSAYDCYDILSKL 1600


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 519 VEGLKMRIYLALGKRSDYIEAADQLNRFFGILE 421
           +EGL  +I L   K+++  +  DQLNR   IL+
Sbjct: 423 LEGLNKQISLTKPKKAEATKRCDQLNREIDILQ 455


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 306 KHTGQIYKLETKLHLTSHK 362
           KH  +I++LE KLH  SH+
Sbjct: 264 KHKNEIFQLEEKLHEASHE 282


>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 684

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 624 QVVPLVEKMKNEFAMQKWEAVFDTL 550
           Q++ LV K  N+ A+  W A FDTL
Sbjct: 485 QLLDLVRKHFNKGAVPNWAAYFDTL 509


>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
           Cct3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/61 (26%), Positives = 23/61 (37%)
 Frame = -3

Query: 234 KDALSFFRAASKLDNNSITALCGLTLCQMLENGPTDQITQQIELLFEMPRNKKSYHFYTC 55
           K  ++  R   K DNN I   CG  +   LE+     +     L +      + Y F T 
Sbjct: 304 KANITALRRTRKSDNNRIARACGANIVNRLEDLREKDVGTGCGLFYIDKLGDEYYTFLTG 363

Query: 54  C 52
           C
Sbjct: 364 C 364


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = -1

Query: 407 IMDISFTILLKSFLEFVGGQVQFCLKLIDLPSMLQKCIQIMLTISVKLATSV 252
           +++I   ILL  F  FVG +  FC+ L+ L  ++   + I +   + +   V
Sbjct: 502 VIEIISFILLAVFRPFVGFKNSFCVFLVALTRVVSFALLIPIAFDLAIIPKV 553


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,571,036
Number of Sequences: 5004
Number of extensions: 73913
Number of successful extensions: 214
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)