Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_O09
         (878 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   2.1  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    23   3.7  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    23   3.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +2

Query: 479 LPSARYILIFKPSTLSGSMENILSNVSKTASHFCIANSFFIFSTRGTTCPELLI 640
           LP  R   +F   TL   +EN+   +S  A++ C+A +   +S RGT   ++++
Sbjct: 531 LPINRKQKVFPNGTLI--IENV-ERMSDQATYTCVARNAQGYSARGTLEVQVMV 581


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -3

Query: 312 YASEMYSNNVDY--LSEVGYQCILQAKYKDALSFFRAASKLDNNSI 181
           YA E+YS+  DY  + E+     L+ +Y D   F  A S L  +S+
Sbjct: 18  YAEELYSDKYDYVNIDEILANDRLRNQYYDC--FIDAGSCLTPDSV 61


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -3

Query: 312 YASEMYSNNVDY--LSEVGYQCILQAKYKDALSFFRAASKLDNNSI 181
           YA E+YS+  DY  + E+     L+ +Y D   F  A S L  +S+
Sbjct: 18  YAEELYSDKYDYVNIDEILANDRLRNQYYDC--FIDAGSCLTPDSV 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,476
Number of Sequences: 438
Number of extensions: 5050
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)