Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_O08
         (735 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390...   200   9e-52
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493...   198   4e-51
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687     31   0.011
05_02_0037 + 5883285-5884292                                           31   0.72 
03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478     31   0.95 

>03_05_0228 -
           22137771-22138016,22138109-22138306,22138852-22139018,
           22139129-22139132
          Length = 204

 Score =  200 bits (488), Expect = 9e-52
 Identities = 98/178 (55%), Positives = 119/178 (66%), Gaps = 1/178 (0%)
 Frame = -2

Query: 677 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 498
           MGAY+Y+ EL+R+K SDVMRF+ RVR W+YRQ   + R  RPTRPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYV 60

Query: 497 XXXXXXXXXXXXXXXXXGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXLSSYW 318
                            G  YGKPK  G+ QLK  RN +S+AEE           L+SYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYW 120

Query: 317 VAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGL-GQG 147
           V +DS+YKYFE+ILVD +H AIR DP+INW+   VHKHRE+RGLTSAG+  RGL G+G
Sbjct: 121 VNEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKG 178



 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -3

Query: 151 KGHRYSQTKGGSRRAAWLRRNTLQLRRKR 65
           KGH + + +  SRRA W R  T+ LRR R
Sbjct: 177 KGHTHHKARP-SRRATWKRNQTVSLRRYR 204


>05_03_0257 +
           11145558-11145876,11148181-11148347,11149114-11149311,
           11149405-11149650
          Length = 309

 Score =  198 bits (483), Expect = 4e-51
 Identities = 97/177 (54%), Positives = 118/177 (66%), Gaps = 1/177 (0%)
 Frame = -2

Query: 674 GAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXXX 495
           GAY+Y+ EL+R+K SDVMRF+ RVR W+YRQ   + R  RPTRPDKARRLGY+AKQ    
Sbjct: 107 GAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVV 166

Query: 494 XXXXXXXXXXXXXXXXGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXLSSYWV 315
                           G  YGKPK  G+ QLK  RN +S+AEE           L+SYWV
Sbjct: 167 YRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWV 226

Query: 314 AQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGL-GQG 147
            +DS+YKYFE+ILVD +H AIR DP+INW+   VHKHRE+RGLTSAG+  RGL G+G
Sbjct: 227 NEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKG 283



 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -3

Query: 151 KGHRYSQTKGGSRRAAWLRRNTLQLRRKR 65
           KGH + + +  SRRA W R  T+ LRR R
Sbjct: 282 KGHTHHKARP-SRRATWKRNQTVSLRRYR 309


>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
          Length = 353

 Score = 31.5 bits (68), Expect(2) = 0.011
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = -2

Query: 290 FEVILVDPSHKAIRRDPK 237
           FE+ILVD +H AIR DPK
Sbjct: 299 FEIILVDVAHSAIRDDPK 316



 Score = 25.0 bits (52), Expect(2) = 0.011
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 437 YGKPKSHGVNQLKPTRN 387
           Y KPK  G+ QLK  RN
Sbjct: 276 YSKPKHQGITQLKFQRN 292


>05_02_0037 + 5883285-5884292
          Length = 335

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -1

Query: 594 AVPSVDSYAPRSQAHKAGQSPKTRLP---C*TRLCCIQNPCATWWPQASSC*GC 442
           AV   ++ AP ++  +A +SP        C  R CC  +P + WWP+     GC
Sbjct: 271 AVFPTEAAAPATEGKEAAKSPDAAAQGGWCLFR-CCWPSPPSVWWPRCGCGGGC 323


>03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478
          Length = 772

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +3

Query: 366 FLSNGLKVARGLQLVDTMALGLAISGTLSNWTLAATTSHTDSE 494
           +++ G +V  G++ V  +ALGL ++GT   W L   T  +D++
Sbjct: 587 YVALGSEVPLGVEKVHELALGLELAGTRFLWALRKPTGVSDAD 629


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,482,879
Number of Sequences: 37544
Number of extensions: 430420
Number of successful extensions: 992
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)