Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_O07
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0715 - 6230393-6231559,6233234-6234553                           28   5.7  
03_01_0622 + 4578018-4578043,4578397-4578526,4578738-4578794,457...    28   5.7  

>12_01_0715 - 6230393-6231559,6233234-6234553
          Length = 828

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 545 ELFDISHTFIKSLISL*GDGKLTLLFSN*NFSHL 444
           E FD+S   I+ +I +  +G +TL +SN  FS L
Sbjct: 496 EFFDLSFNNIEGVIPIPKEGSVTLDYSNNRFSSL 529


>03_01_0622 +
           4578018-4578043,4578397-4578526,4578738-4578794,
           4579666-4579827
          Length = 124

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 113 NFLRINSDLIYKSSNILF-VLSISQLSFFFIVMVKRF 220
           N  RIN  +I   SN LF V+  + + FF + +V +F
Sbjct: 85  NMRRINKKIIQNGSNHLFHVILFALVCFFLVYLVSKF 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,789,269
Number of Sequences: 37544
Number of extensions: 206595
Number of successful extensions: 364
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)