Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_O05
(565 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0649 - 18402976-18403220,18403305-18404499 46 2e-05
11_04_0234 + 15187065-15188241,15188316-15188494 42 4e-04
10_05_0053 + 8602142-8603581 32 0.36
01_06_0386 - 28917678-28918112 30 1.1
08_02_0969 - 23126389-23126670,23126764-23126947,23127017-231278... 29 2.6
01_05_0226 + 19506090-19506187,19506668-19506763,19507780-19507900 29 3.4
03_02_0829 - 11599665-11600364,11600853-11601076,11601786-116020... 28 4.5
01_02_0015 + 10191793-10191957,10192085-10192229,10192331-101924... 28 4.5
01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311 28 5.9
04_04_1049 + 30414545-30414596,30414732-30414853,30415121-304151... 27 7.8
02_05_1225 + 35060642-35060815,35061254-35061802,35062284-350623... 27 7.8
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 46.4 bits (105), Expect = 2e-05
Identities = 35/143 (24%), Positives = 60/143 (41%)
Frame = -1
Query: 544 ADAAVTYWLTSGAPSQKIVLSIATFGRTWKLDADSEIAGVPPIHTDGPGEAGPYVKTEGL 365
A V WL +G P+ K+V+ I +GR+W L + P+ GP + G G
Sbjct: 261 ASYGVVSWLDAGVPASKVVMGIPLYGRSWFLRNKANSGVGAPVVAAGPKQRGS--NATGA 318
Query: 364 LSYPEVCGKLINPNQQKGMRPHLRKVTDPSKRFGTYAFRLPDDNGEGGIWVSYEDPDTAG 185
+SY EV + + +G R + + S +Y G +WV+++
Sbjct: 319 MSYAEV--QWLAATATRGSRAVITAYDNAS--VASYV-------SVGDVWVAFDGVAVVA 367
Query: 184 QKAAYVKSKNLGGVAIVDLSLDD 116
+K A+ L G + ++ DD
Sbjct: 368 EKLAFAARCGLLGYFLWPVNYDD 390
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 41.5 bits (93), Expect = 4e-04
Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 1/144 (0%)
Frame = -1
Query: 544 ADAAVTYWLTSGAPSQKIVLSIATFGRTWKL-DADSEIAGVPPIHTDGPGEAGPYVKTEG 368
A V WL +G P K+V+ I FGR+W L + D G P T G G
Sbjct: 260 ASYGVISWLDAGLPPCKLVMGIPLFGRSWFLRNKDKNGLGAP---TAAAGTKQRKSNQIG 316
Query: 367 LLSYPEVCGKLINPNQQKGMRPHLRKVTDPSKRFGTYAFRLPDDNGEGGIWVSYEDPDTA 188
+++Y E+ ++ ++ VT ++ Y + G +WVS++
Sbjct: 317 VIAYAEI---------EEYLKSQSVFVTHDNQSVADYFY-------SGDLWVSFDSAVVV 360
Query: 187 GQKAAYVKSKNLGGVAIVDLSLDD 116
+K +V L G + +S DD
Sbjct: 361 QEKVEFVAKSQLLGYFLSTISFDD 384
>10_05_0053 + 8602142-8603581
Length = 479
Score = 31.9 bits (69), Expect = 0.36
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +3
Query: 30 YVIKVKIF*RRYLAALRIGYLSPVQRPRKSSNDRSTIATPPRFFDL 167
Y+ + K RRY+ AL +G++ QR +++S+ S PPRF L
Sbjct: 99 YICRRKPPSRRYVGALAVGFVQ--QRRQENSSSSSGAPPPPRFIPL 142
>01_06_0386 - 28917678-28918112
Length = 144
Score = 30.3 bits (65), Expect = 1.1
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = +3
Query: 219 MPPSPLSSGRRKAYVPKR--LLGSVTFLR*GRIPFCWLGLINLPQTSG*LSKPSVLTYGP 392
+PPS L+S ++ ++P R L+ + + ++ C LGLI P + S LT G
Sbjct: 35 IPPSALASPMQRIWIPTRTPLIDTDWY----KVVVCSLGLITKPSGNSVDSTACTLTSGA 90
Query: 393 ASPGPSVWIGGTPAISLSASSFQV 464
+S V + G S + F +
Sbjct: 91 SSSKSPVVLPGIAHFGASNAGFDI 114
>08_02_0969 -
23126389-23126670,23126764-23126947,23127017-23127834,
23127953-23128642
Length = 657
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +3
Query: 123 NDRSTIATPPRFFDLT*AAFWPAVSGSSYDTQMPPSPLSSGRRKA 257
+D + T P L A A GS T PPSP GRR++
Sbjct: 537 SDNGGMMTVPNLGTLDPMADADANDGSQMQTPAPPSPAGEGRRRS 581
>01_05_0226 + 19506090-19506187,19506668-19506763,19507780-19507900
Length = 104
Score = 28.7 bits (61), Expect = 3.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 205 RMIPKCHPHRCHQEDGRRMFRNA 273
+M +CH H H DGR + R A
Sbjct: 35 KMKTRCHDHELHDADGRSILRKA 57
>03_02_0829 -
11599665-11600364,11600853-11601076,11601786-11602000,
11602300-11602377,11602593-11603907
Length = 843
Score = 28.3 bits (60), Expect = 4.5
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 87 YLSPVQRPRKSSNDRSTIATP-PRFFDLT*AAFWPAVSGSSYDTQMP-PSPLSSGR 248
+L P + P SS ST ATP P P++S + D+ P PSPLSSGR
Sbjct: 55 FLEP-EVPTDSSLYTSTSATPEPPTIRQKSRNLSPSISHQASDSFSPVPSPLSSGR 109
>01_02_0015 +
10191793-10191957,10192085-10192229,10192331-10192419,
10193009-10193063,10193607-10193692,10194006-10194065
Length = 199
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 202 DPDTAGQKAAYVKSKNLGGVAIVDLSLDDFRGLCTGDK 89
D + G+ A + G V V ++D+FR LCTGDK
Sbjct: 71 DVEVGGEPAGRIVIGLFGEV--VPKTVDNFRALCTGDK 106
>01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311
Length = 705
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 350 FWVTEQTFSLNVWSSFAGTISVDWRDSRN 436
F+ T+ ++ VW + A +I+V W SRN
Sbjct: 54 FYATDGGLAVGVWLATAPSITVTWTASRN 82
>04_04_1049 +
30414545-30414596,30414732-30414853,30415121-30415198,
30415329-30415459,30415644-30417552,30417797-30417836,
30418194-30418259,30418583-30418734
Length = 849
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +3
Query: 195 SGSSYDTQMPPSPLS--SGRRKAYVPKR 272
SGS+Y + PP P S SG ++VP R
Sbjct: 448 SGSTYSSSSPPEPTSSTSGYTSSWVPPR 475
>02_05_1225 +
35060642-35060815,35061254-35061802,35062284-35062348,
35062417-35062957,35063321-35064610
Length = 872
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 281 VSNLPEVRTHSLLLVGVDQLTADFWVTEQ 367
++NLPE T + GV +L AD W + Q
Sbjct: 764 INNLPEWLTKDAEMAGVRRLDADLWPSMQ 792
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,468,987
Number of Sequences: 37544
Number of extensions: 418338
Number of successful extensions: 1223
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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