Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_N24
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    27   1.7  
SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces p...    25   6.8  

>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -2

Query: 314 SSIIGIPPPDVP-VNDESQPKSREYPHKQRIRNLRRLIAEGKVNPTPETL 168
           +S+ G  P  +P +ND++  K R   + ++ R LRR  A   + P  E+L
Sbjct: 4   ASLGGHAPVSLPSLNDDALEKKRAKENSRKQRELRRSSALHSITPRRESL 53


>SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 92  QLYYSYIVL*VWVCKYIKKKSIKNL 18
           ++Y+ Y     W CK+I K +++ L
Sbjct: 166 EMYFQYANFKGWNCKFISKSAVQGL 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,247,185
Number of Sequences: 5004
Number of extensions: 39693
Number of successful extensions: 74
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)