Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_N22
         (330 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy...    27   0.73 
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ...    25   3.0  
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    25   3.9  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    24   5.2  
SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   5.2  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    24   6.8  
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha...    23   9.0  

>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 354

 Score = 27.1 bits (57), Expect = 0.73
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 206 PKDKKIGRLWLKAI*REKSSRLCRKHF 126
           PKDKKI  L+L  +  E +    RKHF
Sbjct: 206 PKDKKIASLFLIGVEDELADYKIRKHF 232


>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 314 SHNIQYLYWNF*LKIILSTMTRYFVPICSEIG 219
           SH ++Y+     L I +  +TR   PIC + G
Sbjct: 190 SHIVKYVLTGIGLLISIVFLTRNLYPICQQAG 221


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 209 IDVLQFLSILVQNNASL 259
           + +LQFLSIL QNN  +
Sbjct: 275 VKILQFLSILGQNNPKI 291


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 297 FVLEFLIKNYFKHNDALFCTNMLRN 223
           +  + LIK Y K     F TN+LR+
Sbjct: 314 YTCQHLIKRYTKFQRVFFLTNVLRS 338


>SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 199 TRKLEDCG*RPFDAKKVRGYVVNTLWNLTMKTLVNTQ 89
           T K E      FD+  V GY+VN  + + + T + +Q
Sbjct: 65  TEKCEKYNISLFDSTFVFGYIVNCFFIIHLNTFLTSQ 101


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 136 RHNLELFSRQMAFNHSLPIFLSFGN 210
           R+N++  S   AF+ ++P+ L F N
Sbjct: 462 RYNIDRVSPNTAFSTNIPLSLPFAN 486


>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
           Prh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 719

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -1

Query: 291 LEFLIKNYFKHNDALFCTNMLRNWSTSIPEGQENW 187
           +E  +K      D L C N LR +  S  + ++ W
Sbjct: 559 IEARLKFLHSEGDLLTCLNALRQYLESSHDSRKQW 593


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,364,113
Number of Sequences: 5004
Number of extensions: 26624
Number of successful extensions: 70
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)