Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_N22
         (330 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0737 + 5614552-5616196,5617425-5617600,5617811-5617930,561...    27   4.7  
04_03_0972 + 21347212-21347284,21347966-21348009,21348153-213482...    26   6.2  
02_05_1159 + 34563779-34564715,34567232-34567399,34567508-34568688     26   6.2  
08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,535...    26   8.3  
03_01_0525 + 3952095-3952217,3953131-3953614,3953695-3953750,395...    26   8.3  

>07_01_0737 +
           5614552-5616196,5617425-5617600,5617811-5617930,
           5618589-5618669,5618769-5618804,5618872-5618922,
           5618923-5618988,5620755-5620976,5622147-5622308,
           5622321-5622491
          Length = 909

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +1

Query: 25  FSTFCFFXKLVSSDIYVNRLTPVYLLMFS*SDSTKCLRHNL 147
           FS      +L++S I  N +TP+   ++  +   KC +H++
Sbjct: 661 FSFAIVLWELITSKIPYNTMTPLQAALYHNTHIVKCTKHDI 701


>04_03_0972 +
           21347212-21347284,21347966-21348009,21348153-21348237,
           21348810-21349358,21350291-21350416,21350772-21350936,
           21351243-21351310,21351529-21351618,21351740-21351830,
           21352214-21352812
          Length = 629

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -1

Query: 300 IFVLEFLIKNYFKHNDALFCTNMLRNWSTSIPEGQENWKTV 178
           + VL  LI+   +  + +  TN L  WS+ + +GQE   T+
Sbjct: 257 MIVLILLIRKKSRELEKIEGTNPLDAWSSCLKKGQEGSSTI 297


>02_05_1159 + 34563779-34564715,34567232-34567399,34567508-34568688
          Length = 761

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -1

Query: 243 CTNMLRNWSTSIPEGQENWKTVVKGHLTRKKFEVMS*TLCGI 118
           CTN L ++S   P G     ++ +G L + KF +    + G+
Sbjct: 329 CTNTLGSYSCMCPRGARGDPSIPQGCLEKDKFTLALKVVTGV 370


>08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,
            5350375-5350589,5351123-5351393,5351986-5352161,
            5352287-5352394,5352821-5352930,5354291-5354393,
            5354658-5354828,5354952-5355080,5355322-5355504,
            5355612-5355701,5355823-5355934,5356100-5356227,
            5357769-5357825,5357872-5357923,5358318-5358393,
            5358860-5358950,5359046-5359224,5359563-5359681,
            5359783-5359880
          Length = 1955

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 278  LKIILSTMTRYFVPICSEIGVHQFPKDKKIGRLWLKAI 165
            LKI+L+  TRY VP    +G   +   K+I     KAI
Sbjct: 1875 LKIVLANYTRYLVPADLTVGQFVYVVRKRIKLSAEKAI 1912


>03_01_0525 +
           3952095-3952217,3953131-3953614,3953695-3953750,
           3953942-3954018,3954862-3954958,3955274-3955407,
           3955760-3955825,3955954-3956044
          Length = 375

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 288 EFLIKNYFKHNDALFCTNMLRNWSTSIPEG 199
           E  + N F H   L    ++RN  TS+PEG
Sbjct: 29  ENYLYNCFAHTGELQSVKIIRNKLTSLPEG 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,520,174
Number of Sequences: 37544
Number of extensions: 133230
Number of successful extensions: 302
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)