Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_N15
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||...    37   0.003
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    29   0.92 
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    28   1.6  
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos...    28   1.6  
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    27   2.8  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   2.8  
SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr 1|||...    26   4.9  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    26   6.5  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   6.5  
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    26   6.5  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   8.6  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   8.6  

>SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 462

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
 Frame = -1

Query: 567 NVGVETPKWAQEVMPQIKEVTKIEYAIQYYTPELIR-LSAGVLLNEILNATASYLSGD-- 397
           N  +   +W ++    + E    E+   Y   +L+R L AG LLN++     +++  +  
Sbjct: 261 NPNLRDEQWLRDAETAVVE----EWFGGYKVSKLMRQLGAGSLLNDLSMRMENFVVAEKN 316

Query: 396 -TEQHKARLYSAHENNVAAIMAAAKVFIPHQPNYGSTIAIEFRRNRTS 256
            +  H+  LY AH+  +AAI+A+   F    P + S + +E   + +S
Sbjct: 317 GSPYHRLALYGAHDVTIAAILASLDAFDYRWPPFTSHLEMELFEDTSS 364


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 633  CAVLNIERGLCTAPINLGFPAN*LXHLLVQY 725
            C++ NIE+ +CT  +  G   N L H ++ Y
Sbjct: 1350 CSIFNIEKDICTKYVQFGHVFN-LLHSIISY 1379


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 250  FSGSAIPSKFNGYRRPVIRLMR 315
            F    IPS   G+R PV R+MR
Sbjct: 1512 FQSLLIPSTLQGFRNPVFRIMR 1533


>SPAC664.03 |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 457

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +3

Query: 366 PNTN-VLYVARYHRTNMKRSHLRFRLTKPQL--IVLSIREYNTE 488
           P  N VLY   Y R+ +KR H+R  ++   +  I LS+R+ N E
Sbjct: 312 PEANQVLYTPIYARSTLKRRHVRAPVSLDAVDGIELSLRDLNDE 355


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
 Frame = -1

Query: 741 YNCPRYIALRDXTASLPEIQDLLAPYKDLFQYLEQ-HTKTNITTSEDVFYLDNLFQTLRN 565
           Y     I+L D  +        L+P       + Q HT+ N   + D F L N  Q    
Sbjct: 95  YFLSNQISLPDSHSYASSFDASLSPPSSPLTCVSQIHTEQNFNNN-DAFSLTNSQQAFSE 153

Query: 564 VGVETPKWAQEVMPQIKEVTKIEYAI 487
           +G +   W  E+  Q + ++  E+ I
Sbjct: 154 IGYDASNWIDELDSQQQVLSFPEFDI 179


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +2

Query: 149 NFSYSQNASPPHPSTERTFPGPPASRAYT 235
           NFSY    S P PS  RT  GP A ++ T
Sbjct: 11  NFSYDSILSTPTPSARRTI-GPRAPKSKT 38


>SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -1

Query: 585 LFQTLRNVGVETPKWAQEVMPQIKEVTKIEYAIQYYTPEL 466
           L  T RN+ +   ++A+ V+P   + T+ E  IQ  T ++
Sbjct: 69  LLNTRRNINLLDKQYAKHVLPSFSDKTEQENEIQRLTIQI 108


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 7/42 (16%)
 Frame = +2

Query: 155 SYSQNASPPHP----STERTFPGPPAS--RAYTAA-KPYFPE 259
           SYS +A+P  P    S+    P P AS  RAY AA +PY P+
Sbjct: 65  SYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQPYPPQ 106


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 362  CAEYKRALCCSVSPDKYEAV 421
            C + K  LCC VSP +  AV
Sbjct: 999  CKQCKTVLCCRVSPSQKAAV 1018


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 407 CPVIPSNIKHVCIRHTKT 354
           CP+I S IKH    +TKT
Sbjct: 9   CPLIESTIKHQSTNYTKT 26


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 502  NRICHSVLYSRIDKTISWGFVKRNLKCDRF 413
            NR  +   Y  I + I+ G +KRN+K DR+
Sbjct: 1549 NRKLYPDYYIIIKRPIALGKIKRNIKNDRY 1578


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 633  CAVLNIERGLCTAPINLGFPAN*LXHLLVQY 725
            CAV NI + +CT  +  G   N L H  V Y
Sbjct: 1322 CAVYNISQRVCTKYVQFGNVFN-LLHAAVSY 1351


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,983,400
Number of Sequences: 5004
Number of extensions: 63193
Number of successful extensions: 208
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)