Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_N15
(741 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0173 + 28140484-28140869,28141079-28141481,28141719-281417... 33 0.18
05_03_0109 + 8490841-8490940,8492098-8493057,8494055-8495520 32 0.55
07_03_1523 + 27432991-27433199,27433585-27434185,27434468-274346... 30 1.7
11_06_0610 - 25449085-25453284 29 2.9
10_08_0584 + 18971761-18971834,18971852-18973133,18973197-189745... 29 2.9
02_05_0046 - 25398412-25398594,25399022-25399060,25399896-254003... 29 2.9
02_02_0641 + 12566416-12566599,12567132-12567327,12568319-125684... 29 2.9
04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69... 29 3.9
03_06_0463 + 34121421-34121560,34121728-34121812,34122129-341224... 29 5.1
08_02_1414 + 26901937-26902597,26903361-26903397,26903733-269037... 28 6.8
04_04_0672 + 27164628-27164792,27164903-27164965,27165298-271654... 28 6.8
10_04_0021 - 7647799-7648386,7648504-7648527 28 9.0
08_01_0022 - 163512-163817,165963-166032,166074-166151,166399-16... 28 9.0
07_03_1432 - 26508135-26508881,26509301-26509708 28 9.0
07_01_0577 - 4286048-4286186,4286600-4286660,4286957-4287089,428... 28 9.0
07_01_0317 + 2229894-2230137,2231142-2231233,2231327-2231364,223... 28 9.0
01_01_0025 + 188915-189132,190625-190705,191350-191506,191958-19... 28 9.0
>05_07_0173 +
28140484-28140869,28141079-28141481,28141719-28141781,
28142350-28142535,28144695-28145076,28145689-28145780,
28145988-28146737,28146969-28147100,28147149-28147247,
28147977-28148132,28150187-28150317,28150798-28151254,
28151327-28151668,28152137-28153001,28153112-28153170,
28153806-28154261,28154835-28154873,28155016-28155201
Length = 1727
Score = 33.5 bits (73), Expect = 0.18
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +3
Query: 360 RVPNTNVLYVARYHRTNMKRSHLRFRLTKPQLIV 461
RV NTN LY+ RY + M SH R + KP L+V
Sbjct: 186 RVTNTNSLYLTRYAKDCM-NSHQRIEIIKPGLLV 218
>05_03_0109 + 8490841-8490940,8492098-8493057,8494055-8495520
Length = 841
Score = 31.9 bits (69), Expect = 0.55
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -1
Query: 630 KTNITTSEDVFYLDNLFQTLRNVGVETPKWAQEVMPQIKE-VTKIEYAIQYYTPE 469
K + ++++ YL + VG + + QEV P IKE + K + A+ YY P+
Sbjct: 483 KEKLAKAKEITYLKGFDDGIMIVGEFSNRKVQEVKPLIKEKLLKADMAVLYYEPQ 537
>07_03_1523 +
27432991-27433199,27433585-27434185,27434468-27434642,
27434686-27436418,27436871-27437317
Length = 1054
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 161 SQNASPPHPSTERTFPGPPASRAYTAAKPYFPE 259
S +A PP P R PGPP R + A P +P+
Sbjct: 211 STDALPPSPHG-RAVPGPPCHRHHVIAPPQWPD 242
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 161 SQNASPPHPSTERTFPGPPASRAYTAAKPYFPE 259
S+++SPP P+ E P PP S P PE
Sbjct: 689 SESSSPPPPAPEGHMPSPPKSTPPVEKSPPTPE 721
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 161 SQNASPPHPSTERTFPGPPASRAYTAAKPYFPE 259
S+ +SPP P+ E P PP S T P PE
Sbjct: 656 SKASSPPPPTPEGHTPSPPKSTPPTEKSPPTPE 688
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 173 SPPHPSTERTFPGPPASRAYTAAKP 247
SPP P +E + P PPA +T + P
Sbjct: 716 SPPTPESEASSPPPPAPEGHTPSPP 740
>10_08_0584 + 18971761-18971834,18971852-18973133,18973197-18974509,
18993885-18993935,18994674-18994829,18995048-18995123,
18995317-18995364,18995445-18995489,18995580-18995679,
18995923-18995968,18996115-18996176,18996257-18996355,
18996536-18996609,18996721-18996790,18997074-18997162,
18997327-18997404
Length = 1220
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = -1
Query: 558 VETPKWAQEVMPQIKEVTKIEYAIQYYTPELIRLSAGV--LLNEILNATASYLS-GDTEQ 388
+E P WA + P+I+ + ++ ++ TPE I + E+L+A A + G T
Sbjct: 976 IEKPDWALDGTPKIEPDSDLQKRVEIKTPEQIERMRETCRIAREVLDAAARIIKPGITTD 1035
Query: 387 HKARLYSAHENNVA 346
R+ HE VA
Sbjct: 1036 EIDRV--VHEETVA 1047
>02_05_0046 -
25398412-25398594,25399022-25399060,25399896-25400360,
25400758-25400816,25400920-25401748,25402554-25402898,
25402973-25403435,25403537-25403640,25403692-25403901,
25404933-25405088,25405774-25406052,25406237-25406986,
25407141-25407232,25407977-25408361,25408672-25408752,
25409196-25409354,25409399-25409506,25409604-25409666,
25409764-25409835,25409932-25410366
Length = 1758
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 360 RVPNTNVLYVARYHRTNMKRSHLRFRLTKPQLI 458
++ NTN LY++RY + S R + KP+L+
Sbjct: 66 QIINTNSLYLSRYAKNLNMNSQQRIEIIKPELL 98
>02_02_0641 +
12566416-12566599,12567132-12567327,12568319-12568406,
12569279-12569330,12569423-12569765,12571282-12571684,
12571770-12571841,12572632-12572817,12573174-12573239,
12574802-12575174,12575917-12576014,12578179-12578305,
12578734-12578924,12579265-12579540,12579837-12579866
Length = 894
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 363 VPNTNVLYVARYHRTNMKRSHLRFRLTKPQL 455
V +TN LY++RY + S+ R +TKP+L
Sbjct: 345 VISTNSLYLSRYAKNLNMNSYQRIEITKPKL 375
>04_01_0069 -
697811-697876,697956-698166,698265-698359,698448-698513,
698595-698643,698720-698770,698856-698908,699263-699331,
699874-699928,700011-700099,700217-700302,700376-700432,
700575-700716,701637-702032
Length = 494
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +2
Query: 161 SQNASPPHPSTERTFPGPPASRAYTAAKP 247
S+ PP PST T P PPA+ A T A+P
Sbjct: 67 SRPPRPPPPSTT-TAPPPPAAPAVTPARP 94
>03_06_0463 +
34121421-34121560,34121728-34121812,34122129-34122428,
34123194-34123352,34123852-34123992,34124078-34124134,
34124534-34124672,34124954-34125058,34125159-34125376,
34125980-34126021,34126136-34126309
Length = 519
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -1
Query: 198 LSVDGCGGEAFCEYEKFVNLVQSYRITLEDFEYICPI 88
+S+ GCG + FC +E+F + + D++ +C I
Sbjct: 445 VSMPGCGNKDFCPFEEFKEKIVEPHLK-HDYDALCKI 480
>08_02_1414 +
26901937-26902597,26903361-26903397,26903733-26903791,
26904198-26904388,26904591-26904680,26904833-26904926,
26905008-26905159,26905250-26905347,26905400-26905459,
26905460-26905598,26905686-26905784,26905883-26906018,
26906352-26906413
Length = 625
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = -1
Query: 588 NLFQTLRNVGVETPKWAQEVMPQIKEVTKIEYAIQYYTPELIR---LSAGVLLNE 433
NL Q LR +G E WA + + +EY ++ P I SA +L+++
Sbjct: 369 NLSQHLRGMGYEPLSWAARIQIALDSARGLEYIHEHTVPVYIHRDIKSANILIDK 423
>04_04_0672 +
27164628-27164792,27164903-27164965,27165298-27165408,
27165454-27165537,27166081-27166194,27166901-27167494,
27167604-27167675,27167761-27167997
Length = 479
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +1
Query: 184 SVYGEDLPRAAGIACIHRRETIFSGSAIPSKFNGYRRPVIRLMRYENFSGCHY 342
SVY LP G+ + RE + G + +N YRRP E+ H+
Sbjct: 152 SVYCGGLPVWFGVLRMEMREMMEGGRLLSEAWNAYRRPPSEQQYCEDAGQIHH 204
>10_04_0021 - 7647799-7648386,7648504-7648527
Length = 203
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = -1
Query: 516 KEVTKIEYAIQYYTPELIRLSAGVLLNEILNATASYLSGDTEQHKAR 376
+E+ ++ I Y + +GVL+N + N S + G +H+A+
Sbjct: 59 QEIKNLQDQIDYAVHHALINQSGVLVNTLTNMIKSVVDGTIAEHQAK 105
>08_01_0022 -
163512-163817,165963-166032,166074-166151,166399-166439,
166830-166880,166997-167065,167924-168019,169217-169328,
169629-169774,169965-170015,170171-170281,170378-170447,
172496-172935
Length = 546
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -3
Query: 571 EKCRR*NAKMGTGSDAANKRSYKNRICHSVLYSRIDK 461
E+ RR + TGS + + R K ++ H +++S +DK
Sbjct: 128 ERRRRNDTGDNTGSMSISSRYPKTKLIHEIIFSSLDK 164
>07_03_1432 - 26508135-26508881,26509301-26509708
Length = 384
Score = 27.9 bits (59), Expect = 9.0
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +2
Query: 158 YSQNASPPHPSTERTFPGPPASRAYTAAKPYFPEVRFLRNSMAIVDP 298
Y+ NASPP P T+P PP+ T P +P S+A V P
Sbjct: 22 YTGNASPPTPI---TYPSPPSLSPST--PPTYPPPSSTPPSLAPVSP 63
>07_01_0577 -
4286048-4286186,4286600-4286660,4286957-4287089,
4287286-4287350,4288346-4288451,4288529-4288750,
4289619-4289852,4289948-4290037,4290605-4291507
Length = 650
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 176 PPHPSTERTFPGPPASRAYTAAKP 247
PP P+ E T P PPAS T +P
Sbjct: 61 PPTPAVEPTLPIPPASTPPTPPQP 84
>07_01_0317 +
2229894-2230137,2231142-2231233,2231327-2231364,
2231695-2231717,2232026-2232132,2232208-2232370,
2232581-2232663,2232775-2232837,2233049-2233072,
2233119-2233304
Length = 340
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +1
Query: 172 FSAASVYGEDLPRAAGIACIHRRETIFSGSA-IPSKFNGYRRPVIRLMRYENFSGCHYCR 348
F A VYG + A + R I+ + + Y + +++ + N+SGC+
Sbjct: 103 FDTAEVYGAGISGAINSESLLGRPGIWGNEGYLDGLGDAYEQGLVKAVGVSNYSGCNLTS 162
Query: 349 YIVFVCRIQTCF 384
+ + R++ +
Sbjct: 163 RVTYDARLRDAY 174
>01_01_0025 + 188915-189132,190625-190705,191350-191506,191958-192161,
192248-192356,192401-192496,192724-193994,194200-194384,
194619-195055,197034-197077,197830-199036,199253-199479
Length = 1411
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 185 PSTERTFPGPPASRAYTAAKPYFPEVRFLRNSM 283
PST P P + A T + P P RFL +SM
Sbjct: 1057 PSTAPLTPPPELAHATTPSSPDVPYARFLLSSM 1089
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,625,194
Number of Sequences: 37544
Number of extensions: 391358
Number of successful extensions: 1314
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1311
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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