Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_N13
         (833 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70203-2|CAA94105.1|  685|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AF016427-10|AAB65348.1|  301|Caenorhabditis elegans Hypothetical...    28   7.2  

>Z70203-2|CAA94105.1|  685|Caenorhabditis elegans Hypothetical
           protein C05G5.2 protein.
          Length = 685

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/70 (27%), Positives = 29/70 (41%)
 Frame = +2

Query: 566 PVRSIEFRSIFDFPGACGTPACADSDVVNWERFRIRPGYEWNSFTLASSGDNAAIPTNPK 745
           P+  +      D P    TP    + V+    F+ +P  +       S  D  ++PT PK
Sbjct: 513 PIEPVVVPKAVDIPAPKPTPVTNTTAVIPKVEFK-KPAAKSLFDDSDSDSDLFSLPTKPK 571

Query: 746 TTIFPSVKNS 775
           T I P  +NS
Sbjct: 572 TPIAPKNRNS 581


>AF016427-10|AAB65348.1|  301|Caenorhabditis elegans Hypothetical
           protein F32D1.7 protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 654 GKGSGSDQDMNGIASPSRPAEIMPLSQRTQKPRYSP 761
           G GSGS  D +G + P+R +  +P +     PR  P
Sbjct: 159 GSGSGSGNDSSGSSGPTRMSGQVPSTSGPPPPRPPP 194


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,477,089
Number of Sequences: 27780
Number of extensions: 526272
Number of successful extensions: 1348
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1348
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)