Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_N11
(781 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0796 + 21572131-21572204,21573427-21573482,21573580-215736... 176 2e-44
05_04_0307 + 20066169-20066410,20066803-20066858,20067490-200675... 171 7e-43
02_05_1044 + 33728623-33728768,33728814-33728993,33729446-337295... 39 0.005
06_03_0178 + 17594062-17595576 30 2.4
01_01_0357 - 2816650-2817897 29 4.1
07_03_0814 + 21700274-21701923,21702282-21702434,21702563-217026... 29 5.5
06_01_1001 + 7783072-7783493,7783530-7784212,7784582-7784592 29 5.5
02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127... 29 5.5
01_06_1161 + 35002125-35002414,35002511-35002648,35003658-35004357 29 5.5
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 28 7.2
07_03_0618 + 19998470-19998970,19999079-19999517,19999617-199998... 28 9.6
06_01_0560 - 3977456-3977527,3978069-3978182,3978264-3978335,397... 28 9.6
05_07_0328 + 29286109-29286120,29286982-29287146,29288427-292885... 28 9.6
>07_03_0796 +
21572131-21572204,21573427-21573482,21573580-21573671,
21574103-21574205,21574297-21574434,21574654-21574907
Length = 238
Score = 176 bits (428), Expect = 2e-44
Identities = 88/225 (39%), Positives = 135/225 (60%), Gaps = 13/225 (5%)
Frame = -3
Query: 695 GLELAQAEALDKDICLLVDEKDNFIGTATKRECHKVGP-DGDVLLHRAFSVFLFNKRGDM 519
G++ Q + D C+LVDE+DN +G +K CH + + + LLHRAFSVFLFN + ++
Sbjct: 12 GMDEVQKRLMFDDECILVDEQDNVVGHESKYNCHLMEKIESENLLHRAFSVFLFNSKYEL 71
Query: 518 FLQRRSSQKVTYPDYYTNACCSHPLY-----IDEKPEEIITAARRRMNHELGIPLDQLDP 354
LQ+RS+ KVT+P +TN CCSHPLY I E + AA+R++ ELGIP + +
Sbjct: 72 LLQQRSATKVTFPLVWTNTCCSHPLYRESELIQENYLGVRNAAQRKLLDELGIPAEDVPV 131
Query: 353 ELFTFMTRVHYHDPGDGVWGEHEIDHILFFQSDVKVKPNSDEISEYCFVPKAEFNSFLPT 174
+ FT + R+ Y P DG WGEHE+D++LF DVKV PN DE+++ +V + + +
Sbjct: 132 DQFTPLGRMLYKAPSDGKWGEHELDYLLFIVRDVKVVPNPDEVADVKYVSREQLKELIRK 191
Query: 173 LEG-----PITPWFNMIRRHRLKLWWDNLHR--IKELAEPEKIQK 60
+ ++PWF ++ + L WWD++ + + E + E I K
Sbjct: 192 ADAGEEGLKLSPWFRLVVDNFLMGWWDHVEKGTLNEAVDMETIHK 236
>05_04_0307 +
20066169-20066410,20066803-20066858,20067490-20067581,
20068400-20068502,20068623-20068760,20068898-20069148
Length = 293
Score = 171 bits (415), Expect = 7e-43
Identities = 88/225 (39%), Positives = 138/225 (61%), Gaps = 13/225 (5%)
Frame = -3
Query: 695 GLELAQAEALDKDICLLVDEKDNFIGTATKRECHKVGP-DGDVLLHRAFSVFLFNKRGDM 519
G++ Q + +D C+LVDE+DN IG +K CH + + +LHRAFSVFLFN + ++
Sbjct: 68 GMDAVQQRLMFEDECILVDEQDNVIGHDSKYNCHLMEKINSGHVLHRAFSVFLFNSKYEL 127
Query: 518 FLQRRSSQKVTYPDYYTNACCSHPLY-----IDEKPEEIITAARRRMNHELGIPLDQLDP 354
LQ+RS+ KVT+P +TN CCSHPLY I++K + AA+R++ ELGI ++L
Sbjct: 128 LLQQRSATKVTFPLVWTNTCCSHPLYRESELIEDKSLGVRNAAQRKLFDELGIQAEELPV 187
Query: 353 ELFTFMTRVHYHDPGDGVWGEHEIDHILFFQSDVKVKPNSDEISEYCFVPKAEFNSFLPT 174
+ F + R+ Y P DG WGEHE+D++LF DV++ PN +E+++ +V + E L
Sbjct: 188 DQFIPLGRMLYKAPSDGKWGEHELDYLLFMVRDVELSPNPEEVADVKYVNRDELKELLKK 247
Query: 173 L---EGPI--TPWFNMIRRHRLKLWWDNLHR--IKELAEPEKIQK 60
EG I +PWF ++ + L WWD++ + ++E + + I K
Sbjct: 248 ADAGEGGIKLSPWFRLVVDNFLMRWWDHVEQGTLEEAIDMKTIHK 292
>02_05_1044 +
33728623-33728768,33728814-33728993,33729446-33729523,
33729834-33729930,33730206-33730339,33730944-33731025,
33731631-33731717,33731875-33731981,33732674-33732845,
33733018-33733259,33733482-33733563,33733954-33734019,
33734040-33734159,33734935-33735012,33735083-33735178,
33735791-33735897,33736031-33736199,33736402-33736452,
33736567-33736650,33736946-33737040,33737175-33737265,
33737342-33737488,33737614-33737676
Length = 857
Score = 38.7 bits (86), Expect = 0.005
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Frame = -3
Query: 605 RECHKVGPDGDVLLHRAFSVFLFNKR-GDMFLQRRSSQKVTYPDYYTNACCSHPLYIDEK 429
R +V DGD HRA V+++++ G++ LQRR+ K T+P + + H D
Sbjct: 47 RIASEVHRDGDY--HRAVHVWIYSESTGELLLQRRADCKDTWPGQWDISSAGHISAGDSS 104
Query: 428 PEEIITAARRRMNHELGIPLDQLDPE-LFTFM 336
+++A+R ++ ELGI L E LF F+
Sbjct: 105 ----LSSAQRELDEELGIKLPSDAFELLFVFL 132
>06_03_0178 + 17594062-17595576
Length = 504
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -2
Query: 183 PSNLGGSDNAVVQHDPPPPIETLVGQLAPHQRARRTGENTKI 58
P GGSD A + PPPP + L AR+ E TK+
Sbjct: 382 PGGSGGSDRAHFK-IPPPPARDVKAHLLSRDAARKIKERTKM 422
>01_01_0357 - 2816650-2817897
Length = 415
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -3
Query: 179 PTLEGPITPWFNMIRRHRLK 120
P EGP+ PWF +RRH+L+
Sbjct: 130 PASEGPLQPWF--LRRHQLR 147
>07_03_0814 +
21700274-21701923,21702282-21702434,21702563-21702634,
21702923-21703033
Length = 661
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +1
Query: 550 LNALWSSTSPSGPTL*HSLFVAVPMKLSFSSTSRQISLSKASAWANSRPSLS 705
L++L S S SG L HSL ++ P LS + ++ A++ A SRP+++
Sbjct: 116 LSSLLHSLSVSGRLLPHSLLLSFPPSLSDPPSPLLLNSLLAASAAASRPAVA 167
>06_01_1001 + 7783072-7783493,7783530-7784212,7784582-7784592
Length = 371
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 422 PRASHLCTVDGCSKHLCSNR 481
P A+ LC VDGC H C R
Sbjct: 140 PLAAVLCAVDGCGHHDCHGR 159
>02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,
1279204-1279336,1279425-1279551,1279788-1280284,
1280578-1280642,1280722-1280823,1281020-1281162,
1281761-1281816,1282214-1282869,1282975-1283165,
1283280-1283574,1283738-1283778,1284082-1284104,
1284173-1284369,1284472-1284581,1285309-1285639,
1285968-1286060,1286095-1286166,1286626-1286886
Length = 1788
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = -3
Query: 668 LDKDICLLVDEKDNF--IGTATKRECHKVGPDGDVLLHRAFSVFLFNKRGDMFLQ 510
+D D LL ++ + +G C +G + D+L FS F+ K G MFL+
Sbjct: 862 VDADRSLLTQREEQYARVGGVAVEFCVHIGRN-DILFDTVFSKFVAAKSGGMFLE 915
>01_06_1161 + 35002125-35002414,35002511-35002648,35003658-35004357
Length = 375
Score = 28.7 bits (61), Expect = 5.5
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Frame = -3
Query: 770 LWSTXRVEKRFLASEPV-KPXTXDKDGL-ELAQAEALDKDICLLVDEKDNFIGTATKREC 597
+W T E F+AS P D+ E A A+ D D C ++ F A
Sbjct: 271 IWPTSAPEAAFVASAAGHSPSAADESVADEAAAAQMADMDYCFGQYDQSTFGAAAAADHR 330
Query: 596 HKVGPDGDV 570
+G DGDV
Sbjct: 331 VLIGDDGDV 339
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = -3
Query: 365 QLDPELFTFMTRVHYHDP---GDGVWGEHEIDHILFFQSDV 252
QL P FT TRV P + WGE EI L+F SDV
Sbjct: 131 QLHPS-FTNPTRVVEQPPFELSESGWGEFEIAITLYFHSDV 170
>07_03_0618 +
19998470-19998970,19999079-19999517,19999617-19999804,
19999944-20000264
Length = 482
Score = 27.9 bits (59), Expect = 9.6
Identities = 23/63 (36%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Frame = -3
Query: 323 YHDP-GDGVWGEHEIDHI--LFFQSDVKVKP----NSDEISEYCFVPKAEFNSFLPTLEG 165
YH P G V+ I H+ FF +K P N I YCFVP S P E
Sbjct: 369 YHIPKGWQVFHAQSITHLDGKFFNDPIKFDPTRFDNQSLIPPYCFVPFGGGPSMCPGNEF 428
Query: 164 PIT 156
P T
Sbjct: 429 PRT 431
>06_01_0560 -
3977456-3977527,3978069-3978182,3978264-3978335,
3978428-3978497,3978608-3978705,3978791-3978992,
3979074-3979141,3979960-3980358
Length = 364
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Frame = +3
Query: 345 KQFRVQLI*WDSQ----FMVHPTSGCRYDFLGLLIY 440
K+F +Q WD + F++H T GC YD G L Y
Sbjct: 274 KEFMIQPP-WDLEIGDAFIIHYTYGCDYDMKGKLTY 308
>05_07_0328 +
29286109-29286120,29286982-29287146,29288427-29288589,
29288625-29288903,29289047-29289122,29289725-29289787,
29292116-29292164,29292413-29292504,29293017-29293068,
29293209-29293271,29293382-29293431,29293941-29294016,
29294444-29294656,29294763-29294869,29294966-29295074,
29295489-29295689,29295773-29296033,29296154-29296171,
29296287-29296397,29296755-29297030,29297108-29297382,
29297814-29298165,29298371-29298655,29298715-29299261,
29301658-29301781,29301871-29301946,29302062-29302136,
29302300-29302353,29302833-29302892,29302977-29303093,
29303228-29303361,29303480-29303682,29303879-29303976,
29304358-29304461,29304537-29304702,29304803-29304925,
29305047-29305129,29305217-29305358,29305523-29305549,
29305784-29305854,29305930-29306518
Length = 2046
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 422 PRASHLCTVDGCSKHLCSNRDMLLFGLISSEGTYHLS 532
PR+ LCT++G S LC+ D LF + + T L+
Sbjct: 802 PRSVLLCTLEGVSYLLCALGDGHLFSFLLNASTGELT 838
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,938,325
Number of Sequences: 37544
Number of extensions: 519185
Number of successful extensions: 1531
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1525
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -