Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_N09
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch...    31   0.14 
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    30   0.24 
SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subu...    25   0.52 
SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subun...    25   0.52 
SPAC513.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    28   0.97 
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    28   1.3  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    26   3.9  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    26   3.9  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   6.8  
SPAC6B12.14c |||conserved fungal protein|Schizosaccharomyces pom...    25   9.0  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    25   9.0  

>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 609

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
 Frame = -1

Query: 386 KVIDKLRAGYYDDL---IAKWCIEKQLCSDYENADLALKFSFPSPVSSLPYLQYYSHCDS 216
           K +D+L AGYYDD     A+  IEK    D +  D  L    PS    L      S  D+
Sbjct: 164 KFMDRLDAGYYDDFQLPTAEDVIEKPSIPDNDTDDSIL----PSNDPQLSKWNQDSRNDA 219

Query: 215 VDLSNQQLTSNIFPSLIVLQ 156
           ++  N  L S++ P++ V Q
Sbjct: 220 ME--NTLLVSHVLPNISVAQ 237


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +2

Query: 443 VGKLWLLALSICCQVP-NSTVVYKTLVGPSTLL*QPRNNFAQI*FHFYQYKPFLYIQRLV 619
           V   W +AL +    P N  ++  + V  S +L  P+N+F  +     +Y PF  I R++
Sbjct: 329 VSLTWGIALHLLSNSPDNIPLIQNSSVVSSKILQNPQNSFQALIIAALKYDPFTLIHRII 388


>SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subunit
           Rpn502|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 25.0 bits (52), Expect(2) = 0.52
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 437 IDAKAYHTESIQNLQKLKVID-KLRAGYYDDLIAKWC 330
           I+ K +  E +Q+L KLK  + K+R G +DD     C
Sbjct: 197 INVKFFEKEDVQSL-KLKYYEQKIRIGLHDDAYLDVC 232



 Score = 22.6 bits (46), Expect(2) = 0.52
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 308 DYENADLALKFSFPSPVSSLPYLQYYSHC 222
           D E ADL  + +    ++SLP LQ    C
Sbjct: 268 DNEQADLLHRINADHKLNSLPLLQQLVKC 296


>SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subunit
           Rpn501|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 25.0 bits (52), Expect(2) = 0.52
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 437 IDAKAYHTESIQNLQKLKVID-KLRAGYYDDLIAKWC 330
           I+ K +  E +Q+L KLK  + K+R G +DD     C
Sbjct: 197 INVKFFEKEDVQSL-KLKYYEQKIRIGLHDDAYLDVC 232



 Score = 22.6 bits (46), Expect(2) = 0.52
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 308 DYENADLALKFSFPSPVSSLPYLQYYSHC 222
           D E ADL  + +    ++SLP LQ    C
Sbjct: 268 DNEQADLLHRINADHKLNSLPLLQQLVKC 296


>SPAC513.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 100

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 474 MDNANNHNFPTLYRCQ 427
           +D+ANNHN   LY CQ
Sbjct: 74  LDDANNHNHAFLYHCQ 89


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -1

Query: 245  YLQYYSHCDSVDLSNQQLTSNI---FPSLIVLQHCKKLSLENNNLTTMKNFPD 96
            Y   ++ CD+    N  L  +I   +  L+    C++L LENN    ++NF +
Sbjct: 1194 YEMTFNDCDAFSEFNFSLLKDITSKWKDLLESFECRRLKLENNKDEILRNFSE 1246


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
 Frame = -1

Query: 398 LQKLKVIDKLRAGYYDDLIAKWCIEK---QLCSDYENADLAL--KFSFPSPV 258
           L ++++  K    +YD+L  KWC E+    +     + D+AL  KF+ P  +
Sbjct: 776 LIRIELDIKYATSFYDELNEKWCSEEGEYNVLVGTSSKDIALTGKFTLPKTI 827


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +2

Query: 137 MIISCNVAELLKKEIY*KSVVDW 205
           + IS + A+ +K+EIY KS+V+W
Sbjct: 294 LTISNSAAKDMKREIYEKSLVNW 316


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 22/81 (27%), Positives = 39/81 (48%)
 Frame = -1

Query: 578 NEIKFERNYSEAVIEELKDQLESCRQLLNLEPDSKWTMLTTTIFLHCIDAKAYHTESIQN 399
           NEI+ +    +   E+L+DQ+++  +      ++  T+      L  ++A  Y TE  + 
Sbjct: 318 NEIQTQNRDLKLETEKLQDQIKALLERNQSLQEALETVKNDEKNLREMNAN-YETEMKEA 376

Query: 398 LQKLKVIDKLRAGYYDDLIAK 336
            QKL   + L + Y DD  AK
Sbjct: 377 RQKLNNKEALISHYDDDFRAK 397


>SPAC6B12.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/31 (29%), Positives = 21/31 (67%)
 Frame = -1

Query: 386 KVIDKLRAGYYDDLIAKWCIEKQLCSDYENA 294
           +V++ + +G   D I+++C+EK   SD +++
Sbjct: 60  EVLELIESGASIDFISQYCLEKLASSDNDSS 90


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/18 (50%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
 Frame = -3

Query: 447 PTLYRCQSIP-HRVNTKF 397
           P +YRC  +P HR  TK+
Sbjct: 363 PVIYRCNLLPHHRTGTKY 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,339,918
Number of Sequences: 5004
Number of extensions: 45237
Number of successful extensions: 131
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)