Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_N07
         (717 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1JKY3 Cluster: Putative inner membrane protein; n=5; Y...    34   4.0  
UniRef50_UPI000155DC50 Cluster: PREDICTED: similar to T-cell rec...    33   5.3  
UniRef50_Q59KA5 Cluster: Putative uncharacterized protein; n=2; ...    33   5.3  
UniRef50_Q8IDB2 Cluster: Putative uncharacterized protein MAL13P...    33   9.3  

>UniRef50_A1JKY3 Cluster: Putative inner membrane protein; n=5;
           Yersinia|Rep: Putative inner membrane protein - Yersinia
           enterocolitica serotype O:8 / biotype 1B (strain 8081)
          Length = 1134

 Score = 33.9 bits (74), Expect = 4.0
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = +3

Query: 360 VLHLRNQKNVRPCENKN*LRLISSTNHRNEFRNCVSCARE*CNDCNIQRSNLG 518
           ++HLRNQ N+   +N N LRLI +T    E RN      E     +I   ++G
Sbjct: 534 IVHLRNQANMICDKNGNILRLIGTTLDMTEIRNLTEALHEEKERLHITLDSIG 586


>UniRef50_UPI000155DC50 Cluster: PREDICTED: similar to T-cell
           receptor alpha chain; n=13; Laurasiatheria|Rep:
           PREDICTED: similar to T-cell receptor alpha chain -
           Equus caballus
          Length = 310

 Score = 33.5 bits (73), Expect = 5.3
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 126 RLTIIIVLQFDQIPHLLPPDSNIIMMYLLIFPTVLLNFYQSSEVAVHFL 272
           R+ +  +L  +Q P LLP    +   +   FP+   +FY S  V VHFL
Sbjct: 25  RVRVSSILDVEQSPQLLPVQEGVGTNFTCSFPST--SFYASHRVGVHFL 71


>UniRef50_Q59KA5 Cluster: Putative uncharacterized protein; n=2;
           Candida albicans|Rep: Putative uncharacterized protein -
           Candida albicans (Yeast)
          Length = 513

 Score = 33.5 bits (73), Expect = 5.3
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 275 LQKMYCNFRRLIKIQKYCWKYQKVHHYYI*IWRKKMRNLVELKNNN 138
           +  +YCN     +   YC K Q    + + +++KK+ +  E+KNNN
Sbjct: 356 IHAVYCNVNSQDQKSSYCLKIQNQLIHILPVFKKKLESSKEVKNNN 401


>UniRef50_Q8IDB2 Cluster: Putative uncharacterized protein
            MAL13P1.293; n=1; Plasmodium falciparum 3D7|Rep: Putative
            uncharacterized protein MAL13P1.293 - Plasmodium
            falciparum (isolate 3D7)
          Length = 3270

 Score = 32.7 bits (71), Expect = 9.3
 Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 3/96 (3%)
 Frame = +3

Query: 369  LRNQKNVRPCENKN*LRLISSTNHRNEFRNCVSCARE*CNDCNIQRSNLGVNFNK*NPV- 545
            L+N  N   C++ N  +     N++N   N +S      N  NI      +NF+  N + 
Sbjct: 1909 LQNNNNKNNCDDNN--KNNCDDNNKNNCDNGISMYEH--NSYNISVDQKNINFDNHNKIY 1964

Query: 546  --AINRNYSRKKITNNSLL*FIRYSFIIICIPFNTI 647
               IN N       NN +  +  + F  IC   NTI
Sbjct: 1965 DHMINNNSKNSFNENNFMNYYHLHIFAFICTTINTI 2000


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 570,640,479
Number of Sequences: 1657284
Number of extensions: 10654844
Number of successful extensions: 19701
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19663
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57851245060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)