Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_N07
         (717 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.81 
DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory pro...    24   1.1  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   1.1  
DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    22   5.7  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 20/76 (26%), Positives = 33/76 (43%)
 Frame = +3

Query: 75  VMTCQ*YILNDLIEFS*RLTIIIVLQFDQIPHLLPPDSNIIMMYLLIFPTVLLNFYQSSE 254
           ++ C  Y     I F+  L +++ + +    HLL   + II    L+F   +  FY    
Sbjct: 234 ILLCIYYFYYAFILFTVHLLLLVCIYYFYYMHLLFCCAFIIFTMHLLFLLCIYYFY---- 289

Query: 255 VAVHFL*CMPYMTRLF 302
            A+  L C+ Y  R F
Sbjct: 290 CALIILLCIYYFCRAF 305


>DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory
           protein 7 protein.
          Length = 127

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -1

Query: 135 LLNATKILLNHLKCIID 85
           +LN  ++L N++KC++D
Sbjct: 35  ILNNDRVLTNYIKCLMD 51


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 498 YYNRCIILLHMRRNCETHSCDLCL 427
           Y N C I ++MRR C+      CL
Sbjct: 226 YGNNCEIDMYMRRKCQECRLKKCL 249


>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
           protein 5 protein.
          Length = 144

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 5/17 (29%), Positives = 15/17 (88%)
 Frame = -1

Query: 135 LLNATKILLNHLKCIID 85
           +L++ ++LLN++ C+++
Sbjct: 46  ILHSKRLLLNYINCLLE 62


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,983
Number of Sequences: 336
Number of extensions: 3149
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)