Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_N07
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0274 + 21967740-21968230,21968411-21968550,21968711-219689...    29   2.8  
04_03_0120 + 11503425-11503507,11503907-11504002,11504069-115041...    28   6.4  

>09_06_0274 +
           21967740-21968230,21968411-21968550,21968711-21968905,
           21969524-21969652,21970063-21970218,21970507-21970589,
           21972229-21972433,21972601-21972805,21973059-21973194,
           21973990-21974164,21974470-21974528,21974642-21974716,
           21974804-21974920,21975010-21975080,21975170-21975473,
           21975721-21976086,21976404-21976514
          Length = 1005

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 311 KMVKKPCHIWHTLQKMYCNFRRLIK 237
           K +KKP +I++ L K Y N RR +K
Sbjct: 725 KDMKKPIYIYYQLDKFYQNHRRYVK 749


>04_03_0120 +
           11503425-11503507,11503907-11504002,11504069-11504144,
           11504633-11504689
          Length = 103

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 165 PHLLPPDSNIIMMYLLIFPTVLLNFYQSSEVAVHFL 272
           P  LPP  N+ +  L+I P  L+NF   S +   F+
Sbjct: 22  PQPLPPSDNMNLFLLMIVPVHLINFIPHSILREGFI 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,049,203
Number of Sequences: 37544
Number of extensions: 239096
Number of successful extensions: 405
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)