Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_N07
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.2  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    24   1.2  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   6.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   6.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.8  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 498 YYNRCIILLHMRRNCETHSCDLCL 427
           Y N C I ++MRR C+      CL
Sbjct: 225 YGNNCEIDMYMRRKCQECRLKKCL 248


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 498 YYNRCIILLHMRRNCETHSCDLCL 427
           Y N C I ++MRR C+      CL
Sbjct: 22  YGNNCEIDMYMRRKCQECRLKKCL 45


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 384 FFDYEDEGHIFNVALIKFAVQSKFQNG 304
           FF  E EGH  N+ +    ++  F NG
Sbjct: 121 FFSNEKEGHFHNIIMPNVYIRI-FPNG 146


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 384 FFDYEDEGHIFNVALIKFAVQSKFQNG 304
           FF  E EGH  N+ +    ++  F NG
Sbjct: 121 FFSNEKEGHFHNIIMPNVYIRI-FPNG 146


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -1

Query: 387 HFFDYEDEGHIFNV 346
           H F+Y D+ HI  +
Sbjct: 503 HIFEYVDQDHIIEI 516


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,297
Number of Sequences: 438
Number of extensions: 3750
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)