Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_N06
         (523 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0278 - 24106072-24106254,24106854-24106898,24106985-241070...    31   0.56 
02_02_0240 + 8196140-8198248,8198381-8198650                           28   4.0  
12_01_0427 + 3359766-3360092,3360425-3360541,3360738-3360893,336...    27   6.9  
11_06_0284 + 21909758-21913645                                         27   9.1  
10_01_0219 + 2353668-2354940,2356303-2356419,2356520-2356560           27   9.1  
01_02_0038 - 10487024-10487728,10487824-10488272,10488356-10489070     27   9.1  

>04_04_0278 -
           24106072-24106254,24106854-24106898,24106985-24107068,
           24107191-24107389,24108281-24108432
          Length = 220

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = -1

Query: 514 ELDFKNMEHLACTEIRAANLT-HCSFASAWSQGDASWTKIKKAHEDCV 374
           ++D+KN  H AC+EIRA +L+  C +     +G   + K+ + HE C+
Sbjct: 104 DMDWKNCAHHACSEIRANHLSGDCHYKRELLRG---FMKM-RGHEQCI 147


>02_02_0240 + 8196140-8198248,8198381-8198650
          Length = 792

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -2

Query: 297 YFLSATKTWSRSAGGYEGIPMTCSELSEKPNTMVMMISKCVYR 169
           +F   T T+SR     EG+P    +L +    +  ++ +C+ R
Sbjct: 229 FFTKLTDTYSRVLNPVEGMPALLKDLQDGAKDLTTVLERCLNR 271


>12_01_0427 +
           3359766-3360092,3360425-3360541,3360738-3360893,
           3361009-3361144,3361303-3361436,3361832-3361987,
           3362496-3362594,3362817-3362932,3363358-3363532,
           3363807-3363885,3363989-3364132,3364206-3364319,
           3364415-3364536,3364929-3365011,3365091-3365188,
           3365300-3365420,3366237-3366333,3366782-3366874,
           3366948-3367053,3367395-3367540,3367617-3367697,
           3367838-3367921,3367997-3368132,3368334-3368400,
           3368943-3369102
          Length = 1048

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 77  FIKLIKKYALGLNCVDKCK 21
           FI+L  + A  LNC+DKCK
Sbjct: 373 FIELQDEAACALNCLDKCK 391


>11_06_0284 + 21909758-21913645
          Length = 1295

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 355  SVLAVRQIDKLEAVDIIEKVFPKCYQDLEPIGR 257
            SV   R+IDK+  ++++  V  + + DLE IG+
Sbjct: 1048 SVRIPRRIDKMINIEVLSNVKAQRHDDLEDIGK 1080


>10_01_0219 + 2353668-2354940,2356303-2356419,2356520-2356560
          Length = 476

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 430 WSQGDASWTKIKKAHEDCVKTKALY 356
           +  GDA+WTK+   H D ++    Y
Sbjct: 291 YEDGDATWTKVTTLHLDAMRPSQSY 315


>01_02_0038 - 10487024-10487728,10487824-10488272,10488356-10489070
          Length = 622

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/67 (23%), Positives = 27/67 (40%)
 Frame = -2

Query: 273 WSRSAGGYEGIPMTCSELSEKPNTMVMMISKCVYRKIQPDXXXXXXXXXXXFPSLLEKCL 94
           WS +A G    P    + S   + M   +++ + RK+ P+              L+E  +
Sbjct: 190 WSAAARGRPSPPAPVFDRSAIVHPMAADVARRILRKVTPELPLVISIFVSPHRELVEANV 249

Query: 93  DTSRHVH 73
            T RH H
Sbjct: 250 ATPRHDH 256


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,966,901
Number of Sequences: 37544
Number of extensions: 207364
Number of successful extensions: 493
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)