Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_N06
         (523 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC115382-1|AAI15383.1|  246|Homo sapiens XRCC6 binding protein 1...    71   2e-12
BC115381-1|AAI15382.1|  246|Homo sapiens XRCC6 binding protein 1...    71   2e-12
BC012776-1|AAH12776.3|  246|Homo sapiens XRCC6 binding protein 1...    71   2e-12
AF078164-1|AAD31085.1|  288|Homo sapiens Ku70-binding protein pr...    71   2e-12

>BC115382-1|AAI15383.1|  246|Homo sapiens XRCC6 binding protein 1
           protein.
          Length = 246

 Score = 71.3 bits (167), Expect = 2e-12
 Identities = 38/91 (41%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
 Frame = -1

Query: 523 CRNELD-FKNMEHLACTEIRAANLT-HCSFASAWSQGDASWTKIKKAHEDCVKTKALYSV 350
           CR  +D F N+ HLAC+E+RAANL+  CS  +   +       +K+ H+ CV+ +A  S+
Sbjct: 134 CRAHVDWFTNIRHLACSEVRAANLSGDCSLVNEIFRLHFG---LKQHHQTCVRDRATLSI 190

Query: 349 LAVRQIDKLEAVDIIEKVFPKCYQDLEPIGR 257
           LAVR I K  A   +++VF  C+ D EP GR
Sbjct: 191 LAVRNISKEVAKKAVDEVFESCFNDHEPFGR 221


>BC115381-1|AAI15382.1|  246|Homo sapiens XRCC6 binding protein 1
           protein.
          Length = 246

 Score = 71.3 bits (167), Expect = 2e-12
 Identities = 38/91 (41%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
 Frame = -1

Query: 523 CRNELD-FKNMEHLACTEIRAANLT-HCSFASAWSQGDASWTKIKKAHEDCVKTKALYSV 350
           CR  +D F N+ HLAC+E+RAANL+  CS  +   +       +K+ H+ CV+ +A  S+
Sbjct: 134 CRAHVDWFTNIRHLACSEVRAANLSGDCSLVNEIFRLHFG---LKQHHQTCVRDRATLSI 190

Query: 349 LAVRQIDKLEAVDIIEKVFPKCYQDLEPIGR 257
           LAVR I K  A   +++VF  C+ D EP GR
Sbjct: 191 LAVRNISKEVAKKAVDEVFESCFNDHEPFGR 221


>BC012776-1|AAH12776.3|  246|Homo sapiens XRCC6 binding protein 1
           protein.
          Length = 246

 Score = 71.3 bits (167), Expect = 2e-12
 Identities = 38/91 (41%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
 Frame = -1

Query: 523 CRNELD-FKNMEHLACTEIRAANLT-HCSFASAWSQGDASWTKIKKAHEDCVKTKALYSV 350
           CR  +D F N+ HLAC+E+RAANL+  CS  +   +       +K+ H+ CV+ +A  S+
Sbjct: 134 CRAHVDWFTNIRHLACSEVRAANLSGDCSLVNEIFRLHFG---LKQHHQTCVRDRATLSI 190

Query: 349 LAVRQIDKLEAVDIIEKVFPKCYQDLEPIGR 257
           LAVR I K  A   +++VF  C+ D EP GR
Sbjct: 191 LAVRNISKEVAKKAVDEVFESCFNDHEPFGR 221


>AF078164-1|AAD31085.1|  288|Homo sapiens Ku70-binding protein
           protein.
          Length = 288

 Score = 71.3 bits (167), Expect = 2e-12
 Identities = 38/91 (41%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
 Frame = -1

Query: 523 CRNELD-FKNMEHLACTEIRAANLT-HCSFASAWSQGDASWTKIKKAHEDCVKTKALYSV 350
           CR  +D F N+ HLAC+E+RAANL+  CS  +   +       +K+ H+ CV+ +A  S+
Sbjct: 176 CRAHVDWFTNIRHLACSEVRAANLSGDCSLVNEIFRLHFG---LKQHHQTCVRDRATLSI 232

Query: 349 LAVRQIDKLEAVDIIEKVFPKCYQDLEPIGR 257
           LAVR I K  A   +++VF  C+ D EP GR
Sbjct: 233 LAVRNISKEVAKKAVDEVFESCFNDHEPFGR 263


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,604,206
Number of Sequences: 237096
Number of extensions: 1103124
Number of successful extensions: 1935
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1931
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)