Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_N05
         (766 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73102-4|CAA97408.1|  203|Caenorhabditis elegans Hypothetical pr...   165   3e-41
AF003390-4|AAB54273.1| 1165|Caenorhabditis elegans Hypothetical ...    33   0.29 
Z79757-1|CAB60999.1|  299|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF040644-4|AAB94968.2|  324|Caenorhabditis elegans Serpentine re...    29   2.7  
AF026056-1|AAB81844.1|  298|Caenorhabditis elegans NK-2 class ho...    29   2.7  
AF045644-3|AAC02602.2|  205|Caenorhabditis elegans Hypothetical ...    29   4.8  
U80845-1|AAK39181.1| 1217|Caenorhabditis elegans Prion-like-(q/n...    28   6.3  

>Z73102-4|CAA97408.1|  203|Caenorhabditis elegans Hypothetical
           protein B0035.3 protein.
          Length = 203

 Score =  165 bits (401), Expect = 3e-41
 Identities = 93/179 (51%), Positives = 110/179 (61%), Gaps = 8/179 (4%)
 Frame = -3

Query: 650 FEKIKINTEKNKSISERVSIFKGDITKLEIDAIVNAANSRLKAGGGVDGAIHRAAG-PFL 474
           FEK K+     K++  R+S++ GDITKL +DAIVNAANSRL  GGGVDGAIHRAAG   L
Sbjct: 13  FEKFKVA----KNVLGRISVWDGDITKLSVDAIVNAANSRLAGGGGVDGAIHRAAGRKQL 68

Query: 473 QAECDSIGGCPTGDAKVTGGYNL-PAKYIIHTVGPQ------DGSAEKLESCYEKCLSFQ 315
           Q EC    GC  GDA +T G N+   K IIHTVGPQ      D   E L +CY   L   
Sbjct: 69  QEECQQYNGCAVGDAVITSGCNINHIKKIIHTVGPQVYGNVTDERRENLVACYRTSLDIA 128

Query: 314 QEYQIKSIAFPCISTGIYGFPNRLAAHIALRTARKFLETNTEMNRIIFCTFLPIDVEIY 138
            E  +KSIAF CISTG+YG+PN  AA        ++LE N  + RI+  TFL ID E Y
Sbjct: 129 IENGMKSIAFCCISTGVYGYPNDDAAKTVTNFLTEYLEKNDTIERIVLVTFLDIDNEHY 187


>AF003390-4|AAB54273.1| 1165|Caenorhabditis elegans Hypothetical
           protein R155.3 protein.
          Length = 1165

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 15/93 (16%)
 Frame = -3

Query: 716 SKYLNKSQGIDSKKSTTDDLKEFEKIKINTE----KNKSIS--ERVSIFK-----GDITK 570
           + Y+N  +   +K + TD LK+FEKI +++       + IS  +++  FK     GD+ K
Sbjct: 433 TSYINSVK--KTKHAETDALKDFEKIGLHSRVIGTATRGISNMQKLVDFKDLADIGDLVK 490

Query: 569 LEIDAIVNAAN----SRLKAGGGVDGAIHRAAG 483
            E++ + +  N    + LKA  G++G +  A+G
Sbjct: 491 SEVEKVKDQLNDENVANLKALAGIEGQLKTASG 523


>Z79757-1|CAB60999.1|  299|Caenorhabditis elegans Hypothetical
           protein F55B12.1 protein.
          Length = 299

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 713 KYLNKSQGIDSKKSTTDDLKEFEKIKINTEK 621
           K  N+  GID +KS+ DD  +  K+K N  K
Sbjct: 15  KEKNEETGIDEEKSSEDDCSKRSKVKSNPSK 45


>AF040644-4|AAB94968.2|  324|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 69 protein.
          Length = 324

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
 Frame = -3

Query: 317 QQEYQIKSIAFPCISTGIYGFPNRLAAHIALRTARKFLETNT-EMNRIIFCTFLP-IDVE 144
           Q+EY  K+  F  ++T  Y        H A+   +  L +NT ++ R++F T +  ++ +
Sbjct: 183 QKEYVEKTAMFLLVATFYYPIVGSYWKHQAMTMLKTHLSSNTSKVTRVMFQTLIKGLNFQ 242

Query: 143 IYETLMQLYLPTL*FLTRVSKTXNKQIKDQFFCLLXRIKFL 21
           I   ++  Y+PT    T +    NK   +QFF     I FL
Sbjct: 243 ILLPMIS-YIPT----TSI-YLFNKVTGEQFFLSQYIITFL 277


>AF026056-1|AAB81844.1|  298|Caenorhabditis elegans NK-2 class
           homeodomain protein protein.
          Length = 298

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 713 KYLNKSQGIDSKKSTTDDLKEFEKIKINTEK 621
           K  N+  GID +KS+ DD  +  K+K N  K
Sbjct: 15  KEKNEETGIDEEKSSEDDCSKRSKVKSNPSK 45


>AF045644-3|AAC02602.2|  205|Caenorhabditis elegans Hypothetical
           protein F57H12.6 protein.
          Length = 205

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 722 PWSKYLNKSQGIDSKKSTTDDLKEFEKIKINTEK-NKSISER 600
           PWS+   K + +  K+   D+LK+F++ K   EK +K   E+
Sbjct: 108 PWSEKPEKIEALAEKELDGDNLKKFKEFKEKKEKEDKEYKEK 149


>U80845-1|AAK39181.1| 1217|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 15
            protein.
          Length = 1217

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 488  AGPFLQAECDSIGGCPTGDAKVTGGYNLP 402
            AGP +Q   +  GG P    KVT G N+P
Sbjct: 1126 AGPMIQQGKNIAGGYPPNQNKVTPGKNVP 1154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,451,703
Number of Sequences: 27780
Number of extensions: 350116
Number of successful extensions: 1132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)