Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_N04
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    28   1.1  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   4.3  
SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   5.6  
SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces ...    26   5.6  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   7.5  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.5  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    25   7.5  

>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 367 TKPLDRASQVLPKRRSKNFSLNNHHFSFIVYQLIQ 471
           TK  D  ++  PK ++  F L+NH  +F+   ++Q
Sbjct: 689 TKIWDNLNRFSPKEKTSTFYLSNHLVNFVTETIVQ 723


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 147 FKHNVNPLMFCSILNFTLLVHGSCNSK 67
           F H + P+  CS++ FT L++ +  SK
Sbjct: 862 FSHELWPIRNCSVMLFTALINRAFGSK 888


>SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 140

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 371 NHWTELLRFFQKEEVKISH*IITILVSLY 457
           +HWT  LRF+  E  KI   ++   VSLY
Sbjct: 103 DHWTHSLRFYYIELSKILLYLLICGVSLY 131


>SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 290

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 33  FMSMNKPENLRFYYCNCRE 89
           FM  N+PE   FY+ N RE
Sbjct: 180 FMMKNEPEKNSFYFLNVRE 198


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 411 SSFWKNLRSSVQWFCFSPIICN 346
           SSF  NL+   +W    PI CN
Sbjct: 465 SSFLNNLKEDTEWLYTFPIGCN 486


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 462 LVYNETKMVIIQ*EIFTSSFWKNLRSSVQWF 370
           L ++E+ MV    E    + W+ +R ++QWF
Sbjct: 295 LEHSESTMVETDAEFEDDAKWETMRKALQWF 325


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -2

Query: 168 NFSENQCFKHNVNPLMFCSILNFTL-LVHGSCNSKILDFR 52
           +F EN+   +       C  L   L L+ GSC  KIL F+
Sbjct: 282 DFVENEVKSYKHEYANICESLRRALVLIQGSCTEKILRFK 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,445,118
Number of Sequences: 5004
Number of extensions: 45568
Number of successful extensions: 100
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)