Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_N04
         (670 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1106 + 8750597-8754031                                           30   1.5  
06_02_0322 + 14369221-14369540,14370240-14370918,14371347-143715...    29   3.3  
05_07_0340 + 29389314-29389627,29389966-29390112,29390654-293907...    28   7.7  

>01_01_1106 + 8750597-8754031
          Length = 1144

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = -2

Query: 273 PHSSRYCQNVRFVVYVLFLKSTLKSLVSFSLIHMLNFSENQCFKHNVNPLMFCSILNFTL 94
           P S    +++R++     L STL + +S SL ++       C   NV P+  C++ N  +
Sbjct: 440 PQSVGKLKHLRYLDLSSSLISTLPNCIS-SLHNLQTLHLYNCINLNVLPMSVCALENLEI 498

Query: 93  LVHGSCN 73
           L   +CN
Sbjct: 499 LNLSACN 505


>06_02_0322 +
           14369221-14369540,14370240-14370918,14371347-14371573,
           14372121-14372312,14372394-14372550,14373860-14374093
          Length = 602

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/52 (25%), Positives = 29/52 (55%)
 Frame = +3

Query: 450 HCIPIDSIFKLINYISIPFIAFSYNRRLIIIVFFYKLDFGNNGVARQLPYLK 605
           HC P D + ++INY+   ++    +   + + F  +  +  NGV+R+L +++
Sbjct: 517 HC-PHDEVPEVINYLLRGWLKNVESEGSVAVPFLEEPSYAENGVSRELEFVR 567


>05_07_0340 +
           29389314-29389627,29389966-29390112,29390654-29390789,
           29391098-29391199,29391801-29391920,29392033-29392113,
           29392578-29392918,29393069-29393314,29394195-29394519,
           29395123-29395356,29395437-29395691
          Length = 766

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = +3

Query: 486 NYISIPFIAFSYNRRLIIIVFFYKLDF 566
           N +SIPF++ +  RRLI+ V F+ L+F
Sbjct: 358 NNLSIPFVSLTV-RRLIVAVAFFFLNF 383


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,510,644
Number of Sequences: 37544
Number of extensions: 219615
Number of successful extensions: 406
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)