Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_N01
         (653 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1MNY3 Cluster: Putative uncharacterized protein LIB022...    38   0.21 
UniRef50_A1RKU4 Cluster: RNA-directed DNA polymerase; n=3; root|...    34   3.4  
UniRef50_UPI00015B5F77 Cluster: PREDICTED: similar to deoxycytid...    33   6.0  
UniRef50_Q7P7L4 Cluster: Putative uncharacterized protein FNV151...    33   7.9  

>UniRef50_Q1MNY3 Cluster: Putative uncharacterized protein LIB022;
           n=1; Lawsonia intracellularis PHE/MN1-00|Rep: Putative
           uncharacterized protein LIB022 - Lawsonia
           intracellularis (strain PHE/MN1-00)
          Length = 934

 Score = 37.9 bits (84), Expect = 0.21
 Identities = 19/78 (24%), Positives = 40/78 (51%)
 Frame = +2

Query: 311 IQICSE*SKHFLKL*DLISYLFVSIHIMFVFI*ADIYIMNLACLNVCYTTVYYKQLFTPE 490
           I +  + +KHF  +  + +Y+++SI I  +    +I I+++  + +CYT  +        
Sbjct: 2   IHLFKDINKHFFTISLIYTYIYISIIIHNIKSIVNIAILSMFSILICYTNAFCINNTKES 61

Query: 491 NSIVFHSFRIKILTEMKK 544
             ++ H+ R +I  E KK
Sbjct: 62  GGLIKHNVRAQIAEERKK 79


>UniRef50_A1RKU4 Cluster: RNA-directed DNA polymerase; n=3;
           root|Rep: RNA-directed DNA polymerase - Shewanella sp.
           (strain W3-18-1)
          Length = 424

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -3

Query: 324 EQICIFLNY-ESSYLCKKFKTKMRSTIVFF**SRRNVLFCTNE 199
           EQI  F N   ++Y C+K KTK  ST+VFF     N++   NE
Sbjct: 85  EQIYQFENLLNAAYQCRKGKTKSNSTLVFFNNLEENIIQIQNE 127


>UniRef50_UPI00015B5F77 Cluster: PREDICTED: similar to
           deoxycytidylate deaminase; n=1; Nasonia vitripennis|Rep:
           PREDICTED: similar to deoxycytidylate deaminase -
           Nasonia vitripennis
          Length = 206

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 22/60 (36%), Positives = 28/60 (46%)
 Frame = -2

Query: 565 FLIVVETLFHLR*NFNSERMKHDTVFRGKELFVINSCVTNI*TR*IHNVYVRLDKHKHNM 386
           FL V     +   N NSE +K+ T++ G  LF  N C   I    I  VY   DKH H +
Sbjct: 99  FLYVCHAELNAILNKNSENVKNCTLYVG--LFPCNECAKVIIQSGIKRVYYMSDKHAHKV 156


>UniRef50_Q7P7L4 Cluster: Putative uncharacterized protein FNV1519;
           n=2; Fusobacterium nucleatum subsp. vincentii ATCC
           49256|Rep: Putative uncharacterized protein FNV1519 -
           Fusobacterium nucleatum subsp. vincentii ATCC 49256
          Length = 194

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = +3

Query: 231 IIKKK---QLWISSLF*IFYINKKIHNLKKYKFVRNKVNIFLNYRI*FHIFLFQYILCLC 401
           I+KKK    L +S L   F I K +  ++K +++ N   I  N    F  FL+ Y++C+ 
Sbjct: 19  ILKKKANISLILSLLILFFLIFKGLKRMEKMEYLFNIEYIGTNIVAFFIFFLYFYVICIF 78

Query: 402 LSKRTY 419
            SK  +
Sbjct: 79  FSKEIF 84


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 575,395,837
Number of Sequences: 1657284
Number of extensions: 10898007
Number of successful extensions: 21904
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21894
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)