Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_N01
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    28   1.4  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    26   4.1  
SPAC23C4.07 |tht2|mug22|meiotically upregulated gene Mug22|Schiz...    25   7.2  
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    25   9.5  

>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 161 AAKQSNLFILKQNSLVQNSTFRLD 232
           A +Q NL  +K N  V+N+TF+LD
Sbjct: 47  ALRQPNLKCIKHNQDVENTTFQLD 70


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 384 IETKRYEIRSYNLRKCL 334
           IE K Y+IR +NL KC+
Sbjct: 273 IELKIYKIRPFNLEKCI 289


>SPAC23C4.07 |tht2|mug22|meiotically upregulated gene
           Mug22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 497 IVFHSFRIKILTEMKKRFYNNQKVWK 574
           +VF S R ++L   K+R Y NQ + K
Sbjct: 62  MVFISERSRLLLRAKRRLYKNQSLMK 87


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 332 SKHFLKL*DLISYLFVSIHIMFVFI*ADIYIMNLACLNVCYTTVY 466
           +K    L   + YLF+SIH+ +VF         LA    C + +Y
Sbjct: 160 NKFLCPLSKYLIYLFLSIHLFYVFQSFPWTYFCLAVSGTCISELY 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,589,811
Number of Sequences: 5004
Number of extensions: 52699
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)