Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_N01
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024859-16|AAK29984.1|  375|Caenorhabditis elegans Hypothetical...    30   1.6  
AC024881-2|AAK71414.1|  274|Caenorhabditis elegans Serpentine re...    28   5.0  

>AC024859-16|AAK29984.1|  375|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.20a protein.
          Length = 375

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +1

Query: 178 FIYFKAKLIGAKQHVPSRLLKKNNCGSH 261
           FI+  A+LIG+K  VP   LKKN   +H
Sbjct: 204 FIFGSAQLIGSKSIVPDSYLKKNIVETH 231


>AC024881-2|AAK71414.1|  274|Caenorhabditis elegans Serpentine
           receptor, class sx protein7 protein.
          Length = 274

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
 Frame = +1

Query: 385 TYYVCVYL--SGH-IHY---EFSVFKCLLHNCLLQTTLYPGKQYRV 504
           TYYVC+ +  +G  +H+     S F CL +       +Y  K+YR+
Sbjct: 227 TYYVCIAVGVTGEDLHFVINNMSFFTCLAYTQTFYIIIYTSKEYRI 272


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,278,525
Number of Sequences: 27780
Number of extensions: 297574
Number of successful extensions: 608
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)