Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_N01
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   3.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.5  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   6.0  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   6.0  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   6.0  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   6.0  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   6.0  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   7.9  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 67  VGIRFISVLIWLAVKRRGEK 8
           VGI F+SVL++      GEK
Sbjct: 248 VGISFLSVLVFYLPSDSGEK 267


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 382  NTYYVCVYLSGHIHYEFSV 438
            NTY+    L  H+ Y+F V
Sbjct: 1271 NTYFEATDLQQHVEYQFWV 1289


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 382  NTYYVCVYLSGHIHYEFSV 438
            NTY+    L  H+ Y+F V
Sbjct: 1267 NTYFEATDLQQHVEYQFWV 1285


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/19 (52%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
 Frame = +3

Query: 285 NKKIHNLKKYKF-VRNKVN 338
           NK IHN   YK+   NK N
Sbjct: 87  NKTIHNNNNYKYNYNNKYN 105


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 285 NKKIHNLKKYKFVRNKVN 338
           NK IHN   YK+  N  N
Sbjct: 87  NKTIHNNNNYKYNYNNNN 104


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 285 NKKIHNLKKYKFVRNKVN 338
           NK IHN   YK+  N  N
Sbjct: 87  NKTIHNNNNYKYNYNNNN 104


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 285 NKKIHNLKKYKFVRNKVN 338
           NK IHN   YK+  N  N
Sbjct: 87  NKTIHNNNNYKYNYNNNN 104


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 285 NKKIHNLKKYKFVRNKVN 338
           NK IHN   YK+  N  N
Sbjct: 320 NKTIHNNNNYKYNYNNNN 337


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 67  VGIRFISVLIWLAVKRRGEK 8
           VGI F++VL++      GEK
Sbjct: 261 VGITFLTVLVFYLPSDSGEK 280


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,696
Number of Sequences: 438
Number of extensions: 3668
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)