Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_M24
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   3.4  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    27   3.4  
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    26   6.0  
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo...    25   7.9  

>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +2

Query: 326 FAVQKLCKTSTFVFFLIIKV 385
           F+++KL K + FVFF+ IK+
Sbjct: 284 FSLKKLAKDTYFVFFMAIKI 303


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 466 TNHKPKKILNLDLINIAIFNSILQTNNRIV 555
           +NH   K++ LD++ IAI N+  Q  + +V
Sbjct: 635 SNHPNAKVIRLDMLQIAIANAPRQKLDEVV 664


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 54  SILNFKQHIDYNVVYRQNHD*FKSCAY 134
           +IL  + + DY  +   NH  F SCAY
Sbjct: 96  NILEHENNSDYASITPSNHPAFTSCAY 122


>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
           es pombe|chr 2|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 478 VCDLYFIQYKKSSS-FPNDIMYKKRRSV 398
           V D++ + Y K S  FP  + YK RRS+
Sbjct: 187 VFDVHQLSYSKDSVLFPPTLFYKPRRSI 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,439,765
Number of Sequences: 5004
Number of extensions: 45149
Number of successful extensions: 92
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)