Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_M24
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0507 - 3704314-3704449,3705038-3705094,3705219-3705297,370...    28   8.2  

>01_01_0507 -
           3704314-3704449,3705038-3705094,3705219-3705297,
           3705380-3705486,3705833-3705949,3706077-3706165,
           3706668-3706721,3706800-3706866,3706971-3707128,
           3707318-3707386,3707481-3707618,3707706-3707740,
           3707829-3707952
          Length = 409

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -1

Query: 599 YIGIFLFLSCYSARSTILLFVWSILLNI--AMLIKSRFRIFFG 477
           Y+G+ +F +  S +  +LLF  S+LL +  AM IK  F    G
Sbjct: 168 YLGLVIFSAAVSIKMNVLLFAPSLLLLMLKAMSIKGVFFALLG 210


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,224,907
Number of Sequences: 37544
Number of extensions: 210401
Number of successful extensions: 364
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)