Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_M24
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83231-5|CAB05753.1|  239|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AL023847-9|CAA19553.1|  239|Caenorhabditis elegans Hypothetical ...    28   7.4  
AF067945-16|AAC17675.1|  341|Caenorhabditis elegans Serpentine r...    28   7.4  
AC025727-1|AAG23391.3|  429|Caenorhabditis elegans Hypothetical ...    27   9.8  

>Z83231-5|CAB05753.1|  239|Caenorhabditis elegans Hypothetical
           protein Y57A10C.1 protein.
          Length = 239

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 117 FKSCAYFMLIH*YYYYSC 170
           FK  A+F ++  YYYY+C
Sbjct: 147 FKISAFFFILETYYYYTC 164


>AL023847-9|CAA19553.1|  239|Caenorhabditis elegans Hypothetical
           protein Y57A10C.1 protein.
          Length = 239

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 117 FKSCAYFMLIH*YYYYSC 170
           FK  A+F ++  YYYY+C
Sbjct: 147 FKISAFFFILETYYYYTC 164


>AF067945-16|AAC17675.1|  341|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 12 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/40 (27%), Positives = 25/40 (62%)
 Frame = -1

Query: 611 FIINYIGIFLFLSCYSARSTILLFVWSILLNIAMLIKSRF 492
           F++N+IGI   +   +  +TI +  + ++LN+  L+ ++F
Sbjct: 147 FLLNFIGIIGAILLQNKNNTIFVVAFLMILNLFALLTNQF 186


>AC025727-1|AAG23391.3|  429|Caenorhabditis elegans Hypothetical
           protein Y73E7A.3 protein.
          Length = 429

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = -1

Query: 617 DKFIINYIGIFLF--LSCYSARSTILLFVWSILLNIAMLIKSRFRIFFGL*FVLYTIQKK 444
           D  I++Y  +F F     YS  + +L    +++ N++ L    + + FG+     T    
Sbjct: 279 DGTIVSYFALFAFSMFIFYSLVTVVLQKTSALMFNLSTLTADFYSLLFGIFMFKDTFHYL 338

Query: 443 FFVS 432
           +FVS
Sbjct: 339 YFVS 342


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,146,269
Number of Sequences: 27780
Number of extensions: 245735
Number of successful extensions: 538
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)