Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_M23
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    44   3e-05
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    33   0.036
SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces...    29   0.77 
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    27   2.3  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    26   5.4  
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo...    25   7.2  

>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
            Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 24/80 (30%), Positives = 40/80 (50%)
 Frame = -3

Query: 433  IVIYNGQLDIIVAYPLTVNYLRNLNFTGSDEYKTAKRYIWKVDGEVAGYVKQAGKLVEIL 254
            ++IY G  D I  Y     +   L + G  E+  A+   W  +G+ AG  K       + 
Sbjct: 913  VLIYAGDADYICNYMGNEAWTDALEWAGQREFYEAELKPWSPNGKEAGRGKSFKNFGYLR 972

Query: 253  VRNAGHMVPGDQPKWALDLI 194
            +  AGHMVP +QP+ +L+++
Sbjct: 973  LYEAGHMVPFNQPEASLEML 992


>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 33.1 bits (72), Expect = 0.036
 Identities = 25/112 (22%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
 Frame = -3

Query: 511 EVEKHLKQDVMKSVAPWIAELLDNYYIVIYNGQLDIIVAYPLTVNYLRNLNFTGSDEYKT 332
           +V     ++ ++S +  I +L+    I+++ G+ D +  Y       R+L + G+  ++ 
Sbjct: 333 DVALQYAREGIESSSKLIQDLVSTVPILLFYGENDFLCNYLSGEKLTRSLEWNGAVGFQN 392

Query: 331 AKRYIWKVDG---EVAGYVKQAGKLVEILVRNAGHMVPGDQPKWALDLITRF 185
                + + G   + +G    +  L    +  A HMVP D P     LIT F
Sbjct: 393 QSAQPFYLPGYSDQPSGSYVSSRNLTFARIVEASHMVPYDHPNEMKTLITAF 444


>SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
 Frame = -3

Query: 436 YIVIYNGQLDIIVAYPLTVNYLRNLNFTGSDEYKTAKR------YIWKVDGEVAGYVKQA 275
           Y +I+    D    Y  T+    N+    +DEY T K       ++WKVD  +  Y+ + 
Sbjct: 152 YYIIFRVFHDSFALYKYTIPSFLNIQ-EWADEYLTGKNPERFRIFLWKVDKLLTAYICRK 210

Query: 274 GKLVEI 257
             L++I
Sbjct: 211 NALLQI 216


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 526  FNNGTEVEKHLKQDVMKSVAPWIAELLD 443
            F+N  +  KH     +KSV PW    +D
Sbjct: 1305 FHNSKQSSKHSPSPTLKSVGPWAPRRVD 1332


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 274 GKLVEILVRNAGH-MVPGDQPKWALDLITRFTHEKTYFD 161
           GKL+   VR A H  +  ++   A+  I  FTH+KTY D
Sbjct: 532 GKLLN--VREASHSQILNNKEIQAIKKIMGFTHKKTYTD 568


>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 443

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +2

Query: 536 SNVYGFADCTSLKHWAKVLKLC 601
           +++Y F+   S+ HW +++K C
Sbjct: 315 AHLYSFSSVKSVVHWLQIIKNC 336


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,677,096
Number of Sequences: 5004
Number of extensions: 54568
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)