Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_M22
         (469 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    29   0.27 
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch...    27   1.9  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   2.5  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    25   5.8  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    25   7.6  
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    25   7.6  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    25   7.6  
SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyce...    25   7.6  

>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 29.5 bits (63), Expect = 0.27
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +2

Query: 155 LVKVHTGVSVLSSSLHDWCMTASCAQKYRVH 247
           L K + G+++  +   +W + + C++KYR H
Sbjct: 153 LQKTNKGIAIPDAETFEWLVCSECSEKYRDH 183


>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
 Frame = +1

Query: 94  VIVLPRLCSKNADCVTFF-FCXGKGTYRGVCAQLIFTRLVYDSIVRAE----VSGAFCFL 258
           V+ +P+LCS N DC  +   C     Y G     +  RL++D +   E    ++ AF   
Sbjct: 237 VLTIPKLCSSNLDCSHYSRVCV---LYSGGVDCGVLARLMHDIVPNNESIDLINVAFENP 293

Query: 259 RVCYRIKGKDTIELPD 306
           R     + ++T  LPD
Sbjct: 294 RFTETYRDRETGLLPD 309


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 268  NILEGSRMHPILLRARCCHTP 206
            N  EG   HP+LLR    HTP
Sbjct: 2072 NASEGLLKHPLLLRNNLIHTP 2092


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -3

Query: 254 KQNAPDTSARTMLSYTNRVKMS*AQTPLYVPLPXQKKNVTQSAFFEQSR-GKTMTKYT 84
           K +AP  +        + ++++   TP +   P  K N   S FF QS  G+T+ K T
Sbjct: 416 KHSAPPVTKSAPFPVVSPLQLN--HTPGFPTSPAAKPNSPTSTFFPQSSFGQTIAKNT 471


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
 Frame = +2

Query: 113 FVQRMQ-IVSRFSSVLVKVHTGVSVLSSSLHDWCMTAS-----CAQKYRVHSASFEY-VT 271
           F++ +Q +V R+  +  K+H  +S L  S  DW +  S        K    + +F Y +T
Sbjct: 409 FLREVQSLVFRYPLLHSKIHLAISTLKDSGCDWNVGLSYLNWLFVNKRITEAINFFYTIT 468

Query: 272 ESKGRTPSNSL 304
            + G  P N L
Sbjct: 469 INAGTRPPNEL 479


>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 18/62 (29%), Positives = 25/62 (40%)
 Frame = -2

Query: 438 ALFVTNMSLKTLVFCVCVTLASAAIQRSALEPIPDKFSGLQGCYIREFDGVLPFDSVTYS 259
           ALFV   S     FCV   +     +   LE     F   Q C+  E   V   +SVT+ 
Sbjct: 28  ALFVARNSKPLRSFCVHYAIKELKEKTYNLELYQSLFEEFQDCFENEQLDVEWVESVTFH 87

Query: 258 KE 253
           ++
Sbjct: 88  RK 89


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = -3

Query: 290 VSFPLIL*HTRRKQNAPDTSARTMLSYTNRVKMS*AQTPLYVPLPXQKKNVTQSAFFEQS 111
           V FP++L + RR+   P  S R    Y++    S  Q P Y      K++ + +++   S
Sbjct: 131 VFFPVLLSYKRREMLPPQPSVRRPRFYSSYSYPSSHQDPAYSSF---KRHRSSNSYSSSS 187

Query: 110 RG 105
            G
Sbjct: 188 NG 189


>SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +2

Query: 77  FFLCTWSLFYHGFVQRMQIVSRFSSV-LVKVHTGVSVLS 190
           +F+ + +  YHG+     ++SRF+ V  + V +GV ++S
Sbjct: 214 YFIGSTTAGYHGWFDYSHVISRFNEVPALYVISGVILVS 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,951,846
Number of Sequences: 5004
Number of extensions: 40204
Number of successful extensions: 101
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)