Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_M19
         (868 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    25   1.0  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    24   1.3  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    24   1.3  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    24   1.3  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   9.5  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   9.5  

>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +3

Query: 633 RPLXRACRDRSPLALAPT 686
           RPL R CRD   L LA T
Sbjct: 245 RPLARTCRDNRLLVLAGT 262


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 7/30 (23%), Positives = 16/30 (53%)
 Frame = -1

Query: 280 SSNAFRFEGWGSRCNYTETLKFISQGGWRI 191
           + N+ ++ G      Y E ++   +GGW++
Sbjct: 284 AGNSGKYTGEAGMLGYNEIVELQKEGGWKV 313


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 430 VFLMGVENNLPDLTLHPQYNTNR 362
           +FLM +E N P + L+   N NR
Sbjct: 366 MFLMAIEKNPPIMNLNGYANVNR 388


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 430 VFLMGVENNLPDLTLHPQYNTNR 362
           +FLM +E N P + L+   N NR
Sbjct: 366 MFLMAIEKNPPIMNLNGYANVNR 388


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 525 VLSTNCSFLIFISNF 481
           VL T C+FLI I  F
Sbjct: 336 VLGTACTFLIIIVQF 350


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -1

Query: 811 GYICCEGCGMVYGMVY 764
           G   CEGC   +G  Y
Sbjct: 18  GAFTCEGCKSFFGRTY 33


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,754
Number of Sequences: 336
Number of extensions: 4204
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 23893023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)