Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_M14
(799 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0129 + 12831947-12832048,12832358-12832414,12832514-128327... 137 8e-33
05_01_0432 + 3428920-3428934,3429007-3429111,3429341-3429397,342... 137 1e-32
03_02_0067 + 5364713-5364936,5365513-5367016,5367207-5368250,536... 30 1.9
11_04_0241 + 15262237-15262861,15264392-15264549,15266236-15266445 29 3.2
06_03_1036 + 27053480-27053729,27054616-27054704,27054881-270549... 29 3.2
01_06_0409 + 29142409-29142870 29 3.2
01_03_0201 + 13758227-13758760,13758784-13759452 29 3.2
01_06_0371 + 28819035-28819322,28820541-28820595,28821179-288213... 29 4.3
11_06_0008 - 19181933-19182009,19185148-19185691 29 5.7
04_04_1120 + 31037811-31038813,31038903-31038991,31039094-310391... 29 5.7
01_06_1072 + 34295227-34295316,34295410-34295583,34296268-342963... 29 5.7
01_01_0522 - 3834551-3835451,3835992-3836572 28 7.5
01_07_0117 + 41171919-41172395 28 9.9
>01_03_0129 +
12831947-12832048,12832358-12832414,12832514-12832717,
12832799-12832858,12835026-12835152,12835801-12835889
Length = 212
Score = 137 bits (332), Expect = 8e-33
Identities = 64/156 (41%), Positives = 94/156 (60%), Gaps = 4/156 (2%)
Frame = -1
Query: 616 KQFVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLLSADFWTVKNISGRLLV 437
+ + +P FFH++F+ A+ YIL F +F+ FV+ +LL + DFW VKN+SGR+LV
Sbjct: 38 ENYANPKTCFFHVLFKAGALAFYILSALFVTNFVIIFVITVLLAALDFWVVKNVSGRILV 97
Query: 436 GLRWWNYVDDNGKSHWVFEARQ----SRVNRNESRLFWMGLTLCPLVWSTFFIFCLFGLK 269
GLRWWN +DD G S W FE +R+N+ +S LFW L L W IF L L
Sbjct: 98 GLRWWNEIDDEGNSVWKFECLDGESLARMNKKDSWLFWWTLYLTAAAWIVLGIFSLIRLH 157
Query: 268 FKWMLLVLIALTLTGANLYGYIKCKFGAKESLKSAT 161
++L+V + L+L+ AN+ G+ KC AK+++ T
Sbjct: 158 ADYLLVVGVCLSLSIANIVGFTKCNKDAKKNVADWT 193
>05_01_0432 +
3428920-3428934,3429007-3429111,3429341-3429397,
3429499-3429702,3429790-3429849,3430797-3430923,
3431420-3431520
Length = 222
Score = 137 bits (331), Expect = 1e-32
Identities = 61/153 (39%), Positives = 94/153 (61%), Gaps = 4/153 (2%)
Frame = -1
Query: 616 KQFVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLLSADFWTVKNISGRLLV 437
+ + +P FH++F+ A++ YIL F SF+ FV+ + L + DFW VKN+SGR+LV
Sbjct: 44 ENYANPVTCLFHVLFKAGALVFYILFSLFVKSFVIIFVITVFLAALDFWVVKNVSGRILV 103
Query: 436 GLRWWNYVDDNGKSHWVFEARQ----SRVNRNESRLFWMGLTLCPLVWSTFFIFCLFGLK 269
G+RWWN +DD G S W FE +R+N+ +S LFW L L W IF L L+
Sbjct: 104 GMRWWNEIDDEGNSVWKFECLDGEALARMNKKDSWLFWWTLYLTAAAWIILGIFSLIRLE 163
Query: 268 FKWMLLVLIALTLTGANLYGYIKCKFGAKESLK 170
++L+V + LTL+ AN+ G+ +C AK++++
Sbjct: 164 ADYLLVVGVCLTLSLANIVGFTRCNKDAKKNIR 196
>03_02_0067 +
5364713-5364936,5365513-5367016,5367207-5368250,
5368467-5368577,5368997-5369068,5369719-5369737,
5369838-5371142,5371317-5371397,5372441-5372604,
5373363-5373466,5373537-5373628,5374079-5374216,
5374370-5374426,5374820-5375046
Length = 1713
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 438 TSNRPLIFLTVQKSADSSRMTNTKLAMNESENHPHRMYTIIAEH 569
TSN L+ +V++ D+ R L NES + +Y++I +H
Sbjct: 712 TSNSTLVAKSVERLVDAIRPNLCHLVRNESNSSSEFVYSVIGKH 755
>11_04_0241 + 15262237-15262861,15264392-15264549,15266236-15266445
Length = 330
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = -3
Query: 425 VELCGRQRQVALGVRGPSEPGQQEREPPVLDGPDAVPLGLVHFFYILPFRTQVQVDA 255
+E+ G+ + GV EPG EP LD D + +G F+++LP R+ DA
Sbjct: 111 LEVLGKNGCLVEGVL--HEPGG---EPVKLDSQDLLQMGDAQFYFLLPTRSVFATDA 162
>06_03_1036 +
27053480-27053729,27054616-27054704,27054881-27054950,
27055145-27055228,27055332-27055408,27055519-27055583,
27055723-27055765,27055889-27055952,27056126-27056254,
27056522-27056625,27056724-27056828
Length = 359
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = -1
Query: 271 KFKWMLLVLIALTLTGANLYGYIKCKFGAKESLKSATTEFMKQ 143
+F W + +L+A + G + GY+ K+ + + S M Q
Sbjct: 296 RFGWFITILVASCVAGVGIAGYVFYKYRLRSYMDSEIMAIMSQ 338
>01_06_0409 + 29142409-29142870
Length = 153
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 295 KKWTRPRGTASGPSRTGGSRSC*PGSDGPRTPSATCRCRPHSST 426
++W+RP A G R R C GS G R P+AT H +T
Sbjct: 44 RRWSRPDLDAGGSGRR--RRQCGDGSGGGRGPAATWWLPCHLAT 85
>01_03_0201 + 13758227-13758760,13758784-13759452
Length = 400
Score = 29.5 bits (63), Expect = 3.2
Identities = 25/78 (32%), Positives = 35/78 (44%)
Frame = -1
Query: 382 EARQSRVNRNESRLFWMGLTLCPLVWSTFFIFCLFGLKFKWMLLVLIALTLTGANLYGYI 203
+A ++ R+ SR +W+ T C W +F F LF L L L+A L + L G
Sbjct: 148 DAGGGKITRSSSRRWWLCPTGCYARWGSFMEFLLF-LGSTLGALALMAARL--SQLAGAA 204
Query: 202 KCKFGAKESLKSATTEFM 149
A E L+ AT M
Sbjct: 205 PGLAPASELLRRATLVVM 222
>01_06_0371 + 28819035-28819322,28820541-28820595,28821179-28821354,
28821481-28821702,28821796-28822034,28822107-28822632,
28822726-28822999,28823098-28823737,28823833-28824061,
28824299-28824565,28824700-28824963,28825045-28825689
Length = 1274
Score = 29.1 bits (62), Expect = 4.3
Identities = 22/76 (28%), Positives = 29/76 (38%)
Frame = -1
Query: 418 YVDDNGKSHWVFEARQSRVNRNESRLFWMGLTLCPLVWSTFFIFCLFGLKFKWMLLVLIA 239
+ DD S AR S N RL L L V ST + + W L ++I
Sbjct: 799 WFDDPRNSSGALGARLSVDALNVRRLVGDNLALAVQVVSTLITGIVIAMIADWKLTLIIL 858
Query: 238 LTLTGANLYGYIKCKF 191
+ L GY + KF
Sbjct: 859 CVIPLVGLQGYAQVKF 874
>11_06_0008 - 19181933-19182009,19185148-19185691
Length = 206
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 305 PDQGAQRQAHPEQAALVPVDPALTGLEHPV 394
P+ G R +HP+ L+PV L GL PV
Sbjct: 113 PETGGHRVSHPQAPPLLPVLLELGGLRAPV 142
>04_04_1120 +
31037811-31038813,31038903-31038991,31039094-31039163,
31039270-31039353,31039452-31039528,31039631-31039712,
31039847-31039929,31040270-31040333,31040435-31040566,
31040674-31040777,31040901-31040996,31041144-31041251
Length = 663
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = -1
Query: 268 FKWMLLVLIALTLTGANLYGYIKCKFGAKESLKSATTEFMKQ 143
F W++ L+ L GA + GY+ K+ + + S M Q
Sbjct: 568 FGWLVTTLVLSCLAGAGVAGYVFYKYRLRRYMDSEVMAIMSQ 609
>01_06_1072 +
34295227-34295316,34295410-34295583,34296268-34296322,
34296410-34296679,34296881-34297092,34297276-34297396,
34297674-34297761,34297834-34297912,34298092-34298179,
34298312-34298352,34298477-34298529,34298623-34298779,
34298862-34299053
Length = 539
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 413 GRQRQVALGVRGPSEPGQQEREPPVLDG 330
G+QR + LG+ GP G PPVL+G
Sbjct: 245 GQQRMIDLGITGPE--GHALSRPPVLEG 270
>01_01_0522 - 3834551-3835451,3835992-3836572
Length = 493
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 304 TRPRGTASGPSRTGGSRSC*PGSDGPRTPSATCRCRPHSS 423
T P S S G S S S G TP+++CR +PH +
Sbjct: 18 TAPDSRRSWISDIGSSSSVSARSFGGDTPASSCRYKPHKA 57
>01_07_0117 + 41171919-41172395
Length = 158
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +2
Query: 275 SEKAEYKK--SGPDQGAQRQAHPEQAALVPVDPALT 376
S EY + +GP G R A P AA++P PAL+
Sbjct: 35 SAAPEYPRLPTGPGHGGGRHAAPAPAAVLPPAPALS 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,811,216
Number of Sequences: 37544
Number of extensions: 461013
Number of successful extensions: 1367
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1364
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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