Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_M13
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|...    31   0.13 
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    28   0.89 
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   1.5  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    27   2.0  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    26   3.6  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   6.2  
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    25   8.3  
SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc...    25   8.3  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    25   8.3  

>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 126

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 11/105 (10%)
 Frame = -1

Query: 374 LRVVDNSEIGM----RAMAEGK----PPKVICVYNKQRVGFIGDRVMVAIKGQKKKGILV 219
           L+V+DNS   +    R +  GK      +V+ V  K R G          +G     I+V
Sbjct: 8   LKVIDNSGATLAECIRVVRAGKFASLGDEVVVVVKKARSGSSVTAANKVKRGDIHHAIIV 67

Query: 218 GLKQTQKV---KVPKFDSNNIVLIDDNGTPLGTRIHVPIPTILRT 93
             K   +    +  +FD N  VL++    PLGTRI   +   LRT
Sbjct: 68  RTKSPVRRPDGRYVRFDDNACVLVNKECEPLGTRILSVVANELRT 112


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 285 CRFYW*QSNGSYQRAKEERHS 223
           C+ YW QSNG Y   K +RH+
Sbjct: 409 CKLYW-QSNGDYLCVKVDRHT 428


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = -1

Query: 305 CVYNKQRVGFIGD 267
           CVY KQRV FIGD
Sbjct: 145 CVYLKQRVSFIGD 157


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 569 DGQYVFNTTHYREFK*IDIPILTSYKPKNLNQIMFRTILNKLNP 438
           DG Y F TT  ++   ++I IL   KP+  N   +R  L +  P
Sbjct: 669 DGTYFFRTTSRKQILLLEIGIL--IKPERYNLFKYRVYLPQFLP 710


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 434 ELTCGFHTTACLNEVRLLTRLRVVDNS 354
           +L   FH+   LNE++L   L+V+ N+
Sbjct: 313 KLGSAFHSLTALNEIQLANHLQVIANA 339


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 125  IHVPIPTILRTILKEKTHYKGADYTKLLARANQNLLIS 12
            +HV I  I+RT L ++  +    Y+ LL+  + NL+ S
Sbjct: 1008 LHVDIQDIIRTRLAQQLCFGPLAYSALLSTISSNLVES 1045


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 395 EVRLLTRLRVVDNSEIGMRAMAEGKPPKVICVYNKQRV 282
           E  L   L++ D  E+    +A+G+ P  + V NKQ +
Sbjct: 85  ENNLQKPLKISDLQELVFWCLADGQAPSWVLVRNKQMI 122


>SPCC1442.08c |cox12||cytochrome c oxidase subunit
           VIb|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 83

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 225 NAFLLLPFDSYHYSVTNKTDTLFVVYTNYFR 317
           N  L + +  Y +  TN+T   F  Y +YFR
Sbjct: 9   NKLLTISYLLYRFPNTNQTKHCFQSYIDYFR 39


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 198 LLCLLETYKNAFLLLPFDSYHYSVTNKTDTLFVVYTNY 311
           LL  L ++KNA L LP     YS+T+       ++  Y
Sbjct: 603 LLLDLYSFKNALLKLPDLKQDYSITDSYINHLTIFMGY 640


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,531,520
Number of Sequences: 5004
Number of extensions: 53930
Number of successful extensions: 138
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)