Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_M13
         (590 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845     36   0.024
03_02_0999 - 13105030-13105434,13105716-13105850,13105933-131061...    31   0.91 
03_02_0998 - 13097675-13098079,13098307-13098441,13098522-130987...    31   0.91 
10_06_0135 + 11108769-11108953,11109151-11109219,11109932-111100...    29   2.8  
12_01_0465 + 3640736-3640817,3640898-3641088,3641266-3641789,364...    27   8.5  

>12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845
          Length = 170

 Score = 35.9 bits (79), Expect = 0.024
 Identities = 33/114 (28%), Positives = 61/114 (53%), Gaps = 15/114 (13%)
 Frame = -1

Query: 392 VRLLTRLRVVDNSEIGMRAMAEGKPPKVICVYNKQ--RVGFIGDRVMVAIK-----GQKK 234
           +++ T L+VVDNS  G +        +V+C+ + +  +   +GD ++ ++K     G+ K
Sbjct: 52  IQMRTNLKVVDNS--GAK--------RVMCIQSLRGKKGARLGDTIIGSVKEAQPRGKVK 101

Query: 233 KG-ILVGLKQTQKVKVPK-------FDSNNIVLIDDNGTPLGTRIHVPIPTILR 96
           KG ++ G+     +K  +       FD N IVL+++ G  +GTR+  P+P  LR
Sbjct: 102 KGDVVYGVVVRAAMKRGRNDGSEIQFDDNAIVLVNNKGELIGTRVFGPVPHELR 155


>03_02_0999 -
           13105030-13105434,13105716-13105850,13105933-13106133,
           13106374-13106673,13106764-13106964,13107246-13107410,
           13107484-13107663,13108171-13108212,13108327-13108404
          Length = 568

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = -1

Query: 398 NEVRLLTRLRVVDNSEIGMRA-MAEGKPPKVICVYNKQRVGFIGDRVMVAIKGQKKKGIL 222
           + V+L TRLRV++  E+G  A   +GKP   I VY K R    G  +  A        ++
Sbjct: 386 SRVKLETRLRVLEGKELGRSAGSTKGKPK--IEVYEKDRKKGAGALITPAKTYNPAADLV 443

Query: 221 VGLKQTQKVKVPK 183
           +G    +  K P+
Sbjct: 444 LGQSTEETPKKPE 456


>03_02_0998 -
           13097675-13098079,13098307-13098441,13098522-13098722,
           13099060-13099359,13099449-13099649,13099932-13100096,
           13100170-13100349,13100896-13100937,13101040-13101117
          Length = 568

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = -1

Query: 398 NEVRLLTRLRVVDNSEIGMRA-MAEGKPPKVICVYNKQRVGFIGDRVMVAIKGQKKKGIL 222
           + V+L TRLRV++  E+G  A   +GKP   I VY K R    G  +  A        ++
Sbjct: 386 SRVKLETRLRVLEGKELGRSAGSTKGKPK--IEVYEKDRKKGAGALITPAKTYNPAADLV 443

Query: 221 VGLKQTQKVKVPK 183
           +G    +  K P+
Sbjct: 444 LGQSTEETPKKPE 456


>10_06_0135 +
           11108769-11108953,11109151-11109219,11109932-11110067,
           11110632-11110879,11111329-11111555,11111665-11111780,
           11111875-11112051,11112459-11112647,11112754-11112816,
           11113239-11113358
          Length = 509

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
 Frame = -1

Query: 467 FRTILNKLNPVELTCGFHTTACLNEVRLLTRLRVVD-NSEIGMRAMAEGKPPKVICVYNK 291
           F++++  +NP ++  G    + +N    +TR RV+D + +  +R   E   P +  VYN 
Sbjct: 124 FKSLVPMVNPNDIVFGGWDISSMNLADAMTRARVLDIDLQKQLRHHMESMVP-LPGVYNP 182

Query: 290 QRVGF-IGDRVMVAIKGQKKKGI 225
             +    G R    IKG KK+ +
Sbjct: 183 DFIAANQGSRANNVIKGTKKEQV 205


>12_01_0465 +
           3640736-3640817,3640898-3641088,3641266-3641789,
           3643726-3644029
          Length = 366

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +3

Query: 144 SIVIY*NYVVAVELWYFDLLCLLETYKNAFLLLPFDSYHYSVTNKTD 284
           S V Y  YV+     YFD    LE+Y N   ++  DSY +    +T+
Sbjct: 31  SYVSYDRYVLDTSEVYFDDCIPLESYLNIRPMVTSDSYQFRSFGETN 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,208,831
Number of Sequences: 37544
Number of extensions: 303729
Number of successful extensions: 672
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)