Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_M13
         (590 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC065005-1|AAH65005.1|  145|Homo sapiens mitochondrial ribosomal...   112   8e-25
AL109615-2|CAI19245.1|  145|Homo sapiens protein ( Human DNA seq...   112   8e-25
AB051339-1|BAB54929.2|   52|Homo sapiens mitochondrial ribosomal...    45   2e-04
AJ578255-1|CAE18256.1|  110|Homo sapiens immunoglobulin lambda-1...    30   7.0  
AK126579-1|BAC86602.1|  125|Homo sapiens protein ( Homo sapiens ...    29   9.3  

>BC065005-1|AAH65005.1|  145|Homo sapiens mitochondrial ribosomal
           protein L14 protein.
          Length = 145

 Score =  112 bits (270), Expect = 8e-25
 Identities = 55/108 (50%), Positives = 74/108 (68%)
 Frame = -1

Query: 419 FHTTACLNEVRLLTRLRVVDNSEIGMRAMAEGKPPKVICVYNKQRVGFIGDRVMVAIKGQ 240
           F TT  L+ ++ +TR+RVVDNS +G       + P+ I VY K  VG +GD++++AIKGQ
Sbjct: 23  FSTTGSLSAIQKMTRVRVVDNSALGNSPYH--RAPRCIHVYKKNGVGKVGDQILLAIKGQ 80

Query: 239 KKKGILVGLKQTQKVKVPKFDSNNIVLIDDNGTPLGTRIHVPIPTILR 96
           KKK ++VG         P+FDSNN+VLI+DNG P+GTRI  PIPT LR
Sbjct: 81  KKKALIVGHCMPGPRMTPRFDSNNVVLIEDNGNPVGTRIKTPIPTSLR 128


>AL109615-2|CAI19245.1|  145|Homo sapiens protein ( Human DNA
           sequence from clone RP5-1120P11 on chromosome
           6p12.3-21.2.novel gene, the GLRXP gene for glutaredoxin
           (thioltransferase)  ).
          Length = 145

 Score =  112 bits (270), Expect = 8e-25
 Identities = 55/108 (50%), Positives = 74/108 (68%)
 Frame = -1

Query: 419 FHTTACLNEVRLLTRLRVVDNSEIGMRAMAEGKPPKVICVYNKQRVGFIGDRVMVAIKGQ 240
           F TT  L+ ++ +TR+RVVDNS +G       + P+ I VY K  VG +GD++++AIKGQ
Sbjct: 23  FSTTGSLSAIQKMTRVRVVDNSALGNSPYH--RAPRCIHVYKKNGVGKVGDQILLAIKGQ 80

Query: 239 KKKGILVGLKQTQKVKVPKFDSNNIVLIDDNGTPLGTRIHVPIPTILR 96
           KKK ++VG         P+FDSNN+VLI+DNG P+GTRI  PIPT LR
Sbjct: 81  KKKALIVGHCMPGPRMTPRFDSNNVVLIEDNGNPVGTRIKTPIPTSLR 128


>AB051339-1|BAB54929.2|   52|Homo sapiens mitochondrial ribosomal
           protein L14 protein.
          Length = 52

 Score = 44.8 bits (101), Expect = 2e-04
 Identities = 22/54 (40%), Positives = 35/54 (64%)
 Frame = -1

Query: 413 TTACLNEVRLLTRLRVVDNSEIGMRAMAEGKPPKVICVYNKQRVGFIGDRVMVA 252
           TT  L+ ++ +TR+RVVDNS +G       + P+ I VY K  VG +GD++++A
Sbjct: 1   TTGSLSAIQKMTRVRVVDNSALGNSPY--HRAPRCIHVYKKNGVGKVGDQILLA 52


>AJ578255-1|CAE18256.1|  110|Homo sapiens immunoglobulin lambda-1
           variable region protein.
          Length = 110

 Score = 29.9 bits (64), Expect = 7.0
 Identities = 19/79 (24%), Positives = 32/79 (40%)
 Frame = -1

Query: 446 LNPVELTCGFHTTACLNEVRLLTRLRVVDNSEIGMRAMAEGKPPKVICVYNKQRVGFIGD 267
           + P  ++ GF  TA L    +      V N    +    +G PPK++   N  R   I +
Sbjct: 5   IQPPSVSKGFRQTATLTCTGISNN---VGNQGADLLQQQQGHPPKLVSFRNSNRPSGISE 61

Query: 266 RVMVAIKGQKKKGILVGLK 210
           R+  +  G      + GL+
Sbjct: 62  RLSASRSGNTASLTITGLQ 80


>AK126579-1|BAC86602.1|  125|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44616 fis, clone BRACE2012936. ).
          Length = 125

 Score = 29.5 bits (63), Expect = 9.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 362 DNSEIGMRAMAEGKPPKVICVYNKQRVGFIGD 267
           DNS +G+RA    + P+  C   K+  G +GD
Sbjct: 41  DNSFLGIRAPGTARQPREACQLQKRASGVLGD 72


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,221,316
Number of Sequences: 237096
Number of extensions: 1768111
Number of successful extensions: 3477
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3474
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6211568660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)