Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_M10
         (686 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0Q0I3 Cluster: Accessory gene regulator protein C, put...    36   1.2  
UniRef50_Q8I4X4 Cluster: Putative uncharacterized protein; n=1; ...    35   1.6  
UniRef50_Q8IDE5 Cluster: Putative uncharacterized protein MAL13P...    33   8.6  
UniRef50_Q54KF2 Cluster: Putative uncharacterized protein; n=1; ...    33   8.6  
UniRef50_Q4Z2I1 Cluster: Putative uncharacterized protein; n=1; ...    33   8.6  

>UniRef50_A0Q0I3 Cluster: Accessory gene regulator protein C,
           putative; n=1; Clostridium novyi NT|Rep: Accessory gene
           regulator protein C, putative - Clostridium novyi
           (strain NT)
          Length = 437

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 20/42 (47%), Positives = 24/42 (57%)
 Frame = +3

Query: 42  LIINNATIINCHSSITACIKDNFTS*YCPFNIL*L*IVMLTF 167
           +IINN  IIN HS +   IKD +   YC   I    I+MLTF
Sbjct: 128 IIINNIFIINIHSMLWKYIKDKYFLNYCNSIIKNFFILMLTF 169


>UniRef50_Q8I4X4 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 368

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 16/67 (23%), Positives = 33/67 (49%)
 Frame = +2

Query: 143 TLNCHAHIQSRIE*NFCCVLNNETVRRERMGMKDENRSFNLKNKQDRTLTNTVDFRSDKY 322
           +L+ H H  +    N+    N++ + + +  +KD+  S +   K  R    ++    D+Y
Sbjct: 224 SLSSHRHSSNSSHSNYKTNNNHKKISKRKKRIKDKKHSTSSSEKSSRRSNRSISNSQDEY 283

Query: 323 NINSTKI 343
           N NS+K+
Sbjct: 284 NNNSSKL 290


>UniRef50_Q8IDE5 Cluster: Putative uncharacterized protein
           MAL13P1.275; n=4; Plasmodium|Rep: Putative
           uncharacterized protein MAL13P1.275 - Plasmodium
           falciparum (isolate 3D7)
          Length = 1288

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +2

Query: 203 NNETVRRERMGMKDENRSFNLKNKQDRTLTNTVDFRS-DKYNINSTKI 343
           NN  +++ R+G K EN +F  KNK  + L NT+   S  +YN NS  +
Sbjct: 326 NNNNIKKRRIG-KYENNAFYNKNKVKKNLHNTLFNDSLKRYNNNSINL 372


>UniRef50_Q54KF2 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 761

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +2

Query: 146 LNCHAHIQSRIE*NFCCVLNNETVRRERMGMK-DENRSFNLKNKQDRTLTNTVDFRSDKY 322
           +N H ++  RI+ N C ++NN T R ++  +K + N  F  KN Q   + N  +  ++  
Sbjct: 260 INNHNNMNDRIDHNDCTLVNNLTPRDDQNYLKNNSNLEFVNKNNQANNIFNNNNNNNNNN 319

Query: 323 NIN 331
           N N
Sbjct: 320 NNN 322


>UniRef50_Q4Z2I1 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 249

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 461 SNWIRFFFTYTLLHFQIFFSTDNIMHLHDIDEICQLSLPLPR 586
           + WI FFF Y + +F  F  + N     +  +I  + LPLP+
Sbjct: 178 NKWISFFFCYNIYYFNFFNFSKNCNFNQNETKIFHILLPLPQ 219


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 562,803,433
Number of Sequences: 1657284
Number of extensions: 10203750
Number of successful extensions: 22102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22088
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)