Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_M10
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      29   0.83 
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    26   5.9  
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    25   7.8  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    25   7.8  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    25   7.8  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +2

Query: 476 FFFTYTLLHFQIFFSTDNIMHLHDIDEICQLSLPLPR 586
           F F +T LHF  FF      HL DI +   LS  L R
Sbjct: 120 FSFLFTSLHFNFFFRLCRHKHLLDIPDQTTLSSLLHR 156


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 568 QLTYFVYVMKMHNIICGKKNLKMQQSISKKET 473
           Q+ YF    K+++ + G KNL+     SK+ T
Sbjct: 167 QVPYFFVGCKIYDWVAGSKNLRASTIFSKETT 198


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 18/66 (27%), Positives = 27/66 (40%)
 Frame = +2

Query: 146 LNCHAHIQSRIE*NFCCVLNNETVRRERMGMKDENRSFNLKNKQDRTLTNTVDFRSDKYN 325
           L  HA    R   N  CV      + +R+  ++ +   N +N     L   ++F S   N
Sbjct: 80  LEFHAQEGKRDVTNLTCVYGTSPQQLDRLITREFSSDANFQNNHQVFLIGNIEFHS---N 136

Query: 326 INSTKI 343
            NS KI
Sbjct: 137 ENSKKI 142


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +2

Query: 209 ETVRRERMGMKDENRSFNLKNKQDRTLTNTV 301
           E V+++R+G++   RSF L + + R   N++
Sbjct: 352 EAVKQQRLGVEPTARSFTLSSYKSRASGNSL 382


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 377 CAQLSLFEVTVISWSNLYYIY 315
           CA   LF +T   W N YY +
Sbjct: 372 CAMSFLFYITFYCWDNYYYSF 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,511,234
Number of Sequences: 5004
Number of extensions: 48534
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)