Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_M10
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related...    29   4.1  
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p...    28   5.4  
Z75955-5|CAB00119.2|  285|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
           see also lmb-protein 2 protein.
          Length = 1535

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = -1

Query: 287 EFCLVCSSN*RTDFRLSSPFAHDVLFHCLKHSRNFIL--FSIECEHD 153
           +FC  C S  R + +   PF H +   C  HS +      S  CEH+
Sbjct: 696 QFCESCESGFRRETKFGGPFNHCIKCDCHNHSNSCEAESGSCICEHN 742


>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical
           protein F18C12.2b protein.
          Length = 2271

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 251 DFRLSSPFAHDVLFHCLKHSRNF 183
           D R SS +  D+L HCL+ S  F
Sbjct: 86  DMRFSSDYTTDILTHCLQFSTKF 108


>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical
           protein F18C12.2a protein.
          Length = 2279

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 251 DFRLSSPFAHDVLFHCLKHSRNF 183
           D R SS +  D+L HCL+ S  F
Sbjct: 86  DMRFSSDYTTDILTHCLQFSTKF 108


>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
           protein RME-8 protein.
          Length = 2279

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 251 DFRLSSPFAHDVLFHCLKHSRNF 183
           D R SS +  D+L HCL+ S  F
Sbjct: 86  DMRFSSDYTTDILTHCLQFSTKF 108


>Z75955-5|CAB00119.2|  285|Caenorhabditis elegans Hypothetical
           protein R07B7.10 protein.
          Length = 285

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -1

Query: 209 HCLKHSRNFILFSIECEHDNLELQNIKRAIL*CKIVFYACRNRTMAVYY 63
           H  KHSRN     +EC  + +  + ++       +VF  CR+    ++Y
Sbjct: 135 HFSKHSRNLYAGPLECARETVRAEGVRGLFKGGSVVF--CRDNIGYLFY 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,812,234
Number of Sequences: 27780
Number of extensions: 270304
Number of successful extensions: 649
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)