Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_M05
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    33   0.037
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M...    31   0.26 
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    30   0.35 
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    28   1.9  
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac...    27   3.2  
SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   4.3  
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    27   4.3  
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc...    26   5.7  
SPAC3A12.04c |||RNase P and RNase MRP subunit p30 |Schizosacchar...    26   7.5  
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    26   7.5  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    26   7.5  
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    25   9.9  

>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 33.5 bits (73), Expect = 0.037
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 265 DMVSKIYAFCGLKFSCLKGFDSGVTLIFPVASDTSERI 378
           ++ S IYA+CGL   CL  ++  +     V +DTS+ I
Sbjct: 184 ELTSPIYAYCGLANFCLGDYEEALAHFLKVETDTSDGI 221


>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 556

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 21/69 (30%), Positives = 31/69 (44%)
 Frame = -1

Query: 560 NQVRDQDHHGRGKVDIVDKYSSDVDVQKFFTALGSGVKDLVPDESTGGDDQEFERNEASN 381
           N+  +       + D ++K   D ++  F T    G KD VP +   GD+   E  EASN
Sbjct: 37  NEAPELSEDNDAQEDELEKLE-DAELFMFDTGSADGAKDSVPLDIIAGDNTVKEDEEASN 95

Query: 380 VILSEVSDA 354
            I S   D+
Sbjct: 96  EIPSIWEDS 104


>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = -1

Query: 296 PQNAYILDTISGNIYVWIGKQATANEKSQAMTKAQELLNAKNYPSWVQVTR--VLQNTEP 123
           P  A I+D        W GK  +  +K  A +      + K +  W Q+TR  VLQ  + 
Sbjct: 288 PVFAKIVDLFLRFFLSWTGKNISETQKIVAYSHLYSFTSVKCFVHWAQITRRKVLQMYDD 347

Query: 122 A-AFKQYFFT 96
           +  FK  ++T
Sbjct: 348 SPGFKPSYYT 357


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = -3

Query: 348 KDQSDATIEAFQARELESTERVYFGHHIWQHLRLDREAGYRKREISGHDESSGI 187
           K+ ++A+I  F A ELE  +  Y   HIWQ    + E   ++ E  G D   GI
Sbjct: 33  KESTEASINMFLA-ELERLQLEYGKEHIWQ----NEELNLQRVEYQGKDCILGI 81


>SPCC1827.02c |||cholinephosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -1

Query: 437 PDESTGGDDQEFERNEASNVILSEVSDATGKIKVTPLSKPFKQ 309
           P+E    D++E ++ E+ +  L E+S +   ++  P    FK+
Sbjct: 34  PEEQEKKDEKEDDKEESPSKSLEEISQSVSPVEEEPRDVRFKE 76


>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -2

Query: 616 SLSARKLRTLRSLKRFRSPIKYGIRIITDAEKSILWT 506
           SL  RKL T++ LK  R  +   IRI+T+A  +  WT
Sbjct: 43  SLEKRKL-TVQDLKDTRMELNNMIRILTEAMAAHEWT 78


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = -1

Query: 227 ANEKSQAMTKAQELLNAKNYPS-WVQVTRVLQNT--EPAAFKQYFFTWRDFGMSHS 69
           A++ S  + K ++   +K+    W +  + L+N   EPA+ ++Y   W DF  S++
Sbjct: 174 ASQISNKLEKEKDATGSKSIEELWEEHQKQLKNAGLEPASLEEYQKQWEDFLKSNN 229


>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = -1

Query: 704 DVRVRQVDPQIASMNKGDCFVLSLDNDIYVFVGEKAKNVEKLKAISFANQVRDQDHH 534
           D R+ QV+    ++ +G   +    N+  V +G + KNV KL+ +S   ++   D+H
Sbjct: 14  DGRLLQVEYGQEAVRRGTTAIALRGNECIV-IGVERKNVPKLQNVSNFQKIAMVDNH 69


>SPAC3A12.04c |||RNase P and RNase MRP subunit p30
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +3

Query: 669 SYLRIDLSNADIS--LPFDLEHSFLGSRVRDDV 761
           S L  D+ + D +  LPF L+H+F+G  V  D+
Sbjct: 106 SDLEFDILSIDFTQRLPFYLKHTFMGLAVSRDI 138


>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = -1

Query: 629 NDIYVFVGEKAKNVEKLKAISFANQVRDQDHHGRGKVDIVDKYSSDVDVQKFFTALGSGV 450
           +D Y    EK K ++ L A+SF      +  +  G   I +    +++++ F      G+
Sbjct: 202 HDNYTRNIEKLKELDNLVAVSFERDDIVEPPYSTGFGWINETTGENIEMEDFVLYESLGL 261

Query: 449 KDLV 438
           KDLV
Sbjct: 262 KDLV 265


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = +3

Query: 666 RSYLRIDLSNADISLPFDLEHS-----FLGSRVRDDVVKTGRIPSLQIGQGCLE 812
           R YL ++L   ++  PFDLE +     F    V +D +    +PSL I  G +E
Sbjct: 301 REYLEVELYVPNLPFPFDLERAIDDWVFFIFFVGNDFLP--HLPSLDIRDGAVE 352


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 434 DESTGGDDQEFERNEASNVILSEVSDATGKIKVTPLSKP 318
           D+S  GDD++     A + ++  + D   KI   PL  P
Sbjct: 562 DDSFSGDDKQVVDVVAPSFVIPRLDDILNKIADKPLYSP 600


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,276,846
Number of Sequences: 5004
Number of extensions: 65308
Number of successful extensions: 212
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)