Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_M05
(827 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70755-3|CAA94782.1| 475|Caenorhabditis elegans Hypothetical pr... 168 4e-42
U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I ho... 64 1e-10
L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophi... 64 1e-10
U88311-8|AAB42341.2| 918|Caenorhabditis elegans Hypothetical pr... 41 0.001
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass... 30 1.8
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 30 1.8
AL132948-37|CAD31830.2| 410|Caenorhabditis elegans Hypothetical... 30 1.8
AL023844-6|CAA19532.1| 551|Caenorhabditis elegans Hypothetical ... 30 1.8
AC091125-4|AAK27888.1| 732|Caenorhabditis elegans Hypothetical ... 30 1.8
Z81544-7|CAB04432.2| 551|Caenorhabditis elegans Hypothetical pr... 29 4.1
EF472000-1|ABQ96385.1| 1142|Caenorhabditis elegans SMG-3 protein. 28 7.1
AC084197-22|AAK68590.2| 1142|Caenorhabditis elegans Suppressor w... 28 7.1
>Z70755-3|CAA94782.1| 475|Caenorhabditis elegans Hypothetical
protein K06A4.3 protein.
Length = 475
Score = 168 bits (409), Expect = 4e-42
Identities = 91/250 (36%), Positives = 141/250 (56%), Gaps = 3/250 (1%)
Frame = -1
Query: 827 LFXSYFQTPLTYLEGGNPSGFNHVVTNAGAQK-RMFQVKGKRDVRVRQVDPQIASMNKGD 651
LF SYF + Y+ GG SG+ HV K +F KGKR+VR +V+ ++ S+N GD
Sbjct: 103 LFLSYFPDGIRYVSGGYESGYRHVDDQFKNWKPHLFHCKGKRNVRCTEVECEVNSLNLGD 162
Query: 650 CFVLSLDNDIYVFVGEKAKNVEKLKAISFANQVRDQDHHGRGKVDIVDKYSSDVDVQKFF 471
F+L L D+YV++ ++ +E++K ++ A + D + G KV I+D D D F+
Sbjct: 163 VFILDLGKDLYVWMPPESGRLERIKGMARAKNIADHERMGIPKVHILDDVEWDND-STFW 221
Query: 470 TALGSGVKDLVPDESTGGDDQEFERNEASNVILSEVSDATGKIKVTPLSKP--FKQENLS 297
+ G GV + DD + + + L +VSDA+G KV+ +S+ ++E L
Sbjct: 222 SYFG-GVSSVRKVSKGKDDDDNYWKRLTEQITLWKVSDASGAAKVSMVSQGENIRKEQLD 280
Query: 296 PQNAYILDTISGNIYVWIGKQATANEKSQAMTKAQELLNAKNYPSWVQVTRVLQNTEPAA 117
P++A+ILD I+G I+VWIG + T E+S+A+ Q L + P W QVTRVL++ E
Sbjct: 281 PKDAFILDAINGGIFVWIGHECTLEERSKALIWGQNYLKQHHLPRWTQVTRVLESAESTQ 340
Query: 116 FKQYFFTWRD 87
F Q+F W D
Sbjct: 341 FTQWFRDWVD 350
Score = 72.1 bits (169), Expect = 4e-13
Identities = 61/227 (26%), Positives = 108/227 (47%), Gaps = 4/227 (1%)
Frame = -1
Query: 755 VTNAGAQKRMFQVKGKRDVRVRQVDPQIASMNKGDCFVL-SLDNDIYVFVGEKAKNVEKL 579
V++A ++ V ++R Q+DP+ D F+L +++ I+V++G + E+
Sbjct: 256 VSDASGAAKVSMVSQGENIRKEQLDPK-------DAFILDAINGGIFVWIGHECTLEERS 308
Query: 578 KAISFANQVRDQDHHGRG-KVDIVDKYSSDVDVQKFFTALGSGVKDLVPDESTGGDDQEF 402
KA+ + Q H R +V V + + ++F +D V DE
Sbjct: 309 KALIWGQNYLKQHHLPRWTQVTRVLESAESTQFTQWF-------RDWV-DE--------- 351
Query: 401 ERNEASNVILSEVSDATGKIKVTPLSKPFKQENLSPQNAYILDTISGNIYVWIGKQATAN 222
++ +L +VSD +G + V ++ F QE+L + ILD ++ +IYVW+G A AN
Sbjct: 352 KKKNTFTPLLFQVSDESGLLHVEEIAN-FTQEDLDGDDVMILDALN-SIYVWVGANANAN 409
Query: 221 EKSQAMTKAQELLNAKNYP--SWVQVTRVLQNTEPAAFKQYFFTWRD 87
EK +A+ A+ L P + + Q EP FK++F +W D
Sbjct: 410 EKKEALNTAKLYLEKDKLPRHKKTAIDTIFQGKEPPTFKKFFPSWDD 456
>U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I homolog
protein.
Length = 1257
Score = 64.1 bits (149), Expect = 1e-10
Identities = 62/251 (24%), Positives = 110/251 (43%), Gaps = 7/251 (2%)
Frame = -1
Query: 824 FXSYFQTPLTYLEGGNP-SGFNHVVTNAGAQKRMFQ--VKGKRDVRVRQVDPQIASMNKG 654
F + F + Y+EGG SGF + R+++ V G V + V + S++
Sbjct: 599 FLTLFGEEIVYIEGGRTISGF-YTTEKPAHLTRLYRAGVNGTA-VEMEPVPLSVESLDPR 656
Query: 653 DCFVLSLDNDIYVFVGEKAKNVEKLKAISFANQVRDQDHHGRGKVDIVDKYSSDVDVQKF 474
CF+L I+++ G K++ KA FA ++ +D G+ +++ + + F
Sbjct: 657 FCFLLDAGETIWIWSGYKSRITVSNKARLFAERLNKRDRKGKSEIETCRQARCPPE---F 713
Query: 473 FTALGSGVKDLVPDESTGGDDQEF-ERNEASNVILSEVSDATGKIKVTPLSKP---FKQE 306
+ AL PD+ G + E A L +V+ G +++ + P KQ+
Sbjct: 714 WQALTGN-----PDKPQGAIVEHVPEGFVAERKKLYKVNIGMGFLELPQVELPKGIAKQD 768
Query: 305 NLSPQNAYILDTISGNIYVWIGKQATANEKSQAMTKAQELLNAKNYPSWVQVTRVLQNTE 126
L + ++LD+ S +I++WIGK+A K EL + P + QV R + E
Sbjct: 769 MLGSKGVFVLDSNS-DIFLWIGKKANRLLKMAGQKLVVELHQMIDRPDYAQVYRETEGEE 827
Query: 125 PAAFKQYFFTW 93
F+ F W
Sbjct: 828 SMMFRSKFAGW 838
>L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophila
flightless) homologprotein 1 protein.
Length = 1257
Score = 64.1 bits (149), Expect = 1e-10
Identities = 62/251 (24%), Positives = 110/251 (43%), Gaps = 7/251 (2%)
Frame = -1
Query: 824 FXSYFQTPLTYLEGGNP-SGFNHVVTNAGAQKRMFQ--VKGKRDVRVRQVDPQIASMNKG 654
F + F + Y+EGG SGF + R+++ V G V + V + S++
Sbjct: 599 FLTLFGEEIVYIEGGRTISGF-YTTEKPAHLTRLYRAGVNGTA-VEMEPVPLSVESLDPR 656
Query: 653 DCFVLSLDNDIYVFVGEKAKNVEKLKAISFANQVRDQDHHGRGKVDIVDKYSSDVDVQKF 474
CF+L I+++ G K++ KA FA ++ +D G+ +++ + + F
Sbjct: 657 FCFLLDAGETIWIWSGYKSRITVSNKARLFAERLNKRDRKGKSEIETCRQARCPPE---F 713
Query: 473 FTALGSGVKDLVPDESTGGDDQEF-ERNEASNVILSEVSDATGKIKVTPLSKP---FKQE 306
+ AL PD+ G + E A L +V+ G +++ + P KQ+
Sbjct: 714 WQALTGN-----PDKPQGAIVEHVPEGFVAERKKLYKVNIGMGFLELPQVELPKGIAKQD 768
Query: 305 NLSPQNAYILDTISGNIYVWIGKQATANEKSQAMTKAQELLNAKNYPSWVQVTRVLQNTE 126
L + ++LD+ S +I++WIGK+A K EL + P + QV R + E
Sbjct: 769 MLGSKGVFVLDSNS-DIFLWIGKKANRLLKMAGQKLVVELHQMIDRPDYAQVYRETEGEE 827
Query: 125 PAAFKQYFFTW 93
F+ F W
Sbjct: 828 SMMFRSKFAGW 838
>U88311-8|AAB42341.2| 918|Caenorhabditis elegans Hypothetical
protein C10H11.1 protein.
Length = 918
Score = 41.1 bits (92), Expect = 0.001
Identities = 41/186 (22%), Positives = 75/186 (40%), Gaps = 4/186 (2%)
Frame = -1
Query: 728 MFQVKGKRDVRVRQVDPQIASMNKGDCFVLSLDNDIYVFVGEKAKNVEKLKAISFANQV- 552
+ QV+G ++V VR V P ++S+++ CFV+ + + G + +EK KA ++
Sbjct: 221 LIQVRGSKNVDVRLVAPAMSSVHEVACFVVVHQKHLMKYEGLYSNILEKTKASQLCIEIL 280
Query: 551 --RDQDHHGRGKVDIVDKYSSDVDVQKFFTALGSGVKDLVPDESTGGDDQEFERNEAS-N 381
D + V + S + + F + S + + FE A N
Sbjct: 281 GKSDLNCTAESIVTVTGASRSTLS-KLLFCSENSESSSENNNYHQASSVEPFETTVAKLN 339
Query: 380 VILSEVSDATGKIKVTPLSKPFKQENLSPQNAYILDTISGNIYVWIGKQATANEKSQAMT 201
++L D T + + E + P I D IYVW G+ + + A
Sbjct: 340 LVLRIAGDNTA--ETCSRRERLSYEIMKPSEVLIFD-FGSEIYVWTGRYSNKVSSAYAQE 396
Query: 200 KAQELL 183
A++L+
Sbjct: 397 YAKQLM 402
>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform b protein.
Length = 4034
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/79 (25%), Positives = 36/79 (45%)
Frame = -1
Query: 512 VDKYSSDVDVQKFFTALGSGVKDLVPDESTGGDDQEFERNEASNVILSEVSDATGKIKVT 333
VD+ S+ + + S V ++ ++S E E+ SN+ +S + T
Sbjct: 2806 VDQQISEHQTLEVIANIKSAVSSVISNDSVLSKRSEDEKAVISNIANLIISCDLASMSST 2865
Query: 332 PLSKPFKQENLSPQNAYIL 276
S F+++ L PQNA +L
Sbjct: 2866 SNSFEFQRDILEPQNANVL 2884
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/79 (25%), Positives = 36/79 (45%)
Frame = -1
Query: 512 VDKYSSDVDVQKFFTALGSGVKDLVPDESTGGDDQEFERNEASNVILSEVSDATGKIKVT 333
VD+ S+ + + S V ++ ++S E E+ SN+ +S + T
Sbjct: 2806 VDQQISEHQTLEVIANIKSAVSSVISNDSVLSKRSEDEKAVISNIANLIISCDLASMSST 2865
Query: 332 PLSKPFKQENLSPQNAYIL 276
S F+++ L PQNA +L
Sbjct: 2866 SNSFEFQRDILEPQNANVL 2884
>AL132948-37|CAD31830.2| 410|Caenorhabditis elegans Hypothetical
protein Y39B6A.38 protein.
Length = 410
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 497 SDVDVQKFFTALGSGVKDLVPDESTGGDDQEFER 396
S+ DV+ FF+ +G + DL+ +E D Q ER
Sbjct: 328 SEEDVKSFFSKIGHQIDDLIGEEIQATDGQGIER 361
>AL023844-6|CAA19532.1| 551|Caenorhabditis elegans Hypothetical
protein Y48A6B.8 protein.
Length = 551
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = -1
Query: 536 HGRGKVDIVDKYSSDVDVQ-KFFTALGSGVKDLVPDESTGGDDQEFERNEASNVILSEVS 360
HG G D ++ D ++ + + G+G +D V +E G ++QE E N A + SE+S
Sbjct: 85 HGYGIEDDIEDEIDDEELDDEEYEESGNGNEDEV-EEEVGVEEQEIENNFAYKKVKSEIS 143
>AC091125-4|AAK27888.1| 732|Caenorhabditis elegans Hypothetical
protein Y67D2.6 protein.
Length = 732
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 254 YVWIGKQATANEKSQA-MTKAQELLNAKNYPSWVQVTRVLQNT 129
Y + GK T E M K ++ K+YP WV T V+Q++
Sbjct: 643 YHYTGKYMTVKESFPFNMYKGSSIMFKKDYPKWVIFTEVMQDS 685
>Z81544-7|CAB04432.2| 551|Caenorhabditis elegans Hypothetical
protein F49C5.3 protein.
Length = 551
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = -1
Query: 536 HGRG-KVDIVDKYSSDVDVQKFFTALGSGVKDLVPDESTGGDDQEFERNEASNVILSEVS 360
HG G + DI D+ + + + G+G +D V +E ++QE E N A + SE+S
Sbjct: 85 HGYGIEDDIEDEIDDEESDDEEYEESGNGSEDEV-EEEVRVEEQEIENNFAYKKVKSEIS 143
>EF472000-1|ABQ96385.1| 1142|Caenorhabditis elegans SMG-3 protein.
Length = 1142
Score = 28.3 bits (60), Expect = 7.1
Identities = 28/110 (25%), Positives = 53/110 (48%)
Frame = -1
Query: 665 MNKGDCFVLSLDNDIYVFVGEKAKNVEKLKAISFANQVRDQDHHGRGKVDIVDKYSSDVD 486
++K FVL LD+ + + ++A AI F + + ++ R ++D S +D
Sbjct: 432 VSKWQSFVLDLDHLVSKYSTDQA-------AIYFVSNLNNKGCRKRLVKLMIDPPPSRID 484
Query: 485 VQKFFTALGSGVKDLVPDESTGGDDQEFERNEASNVILSEVSDATGKIKV 336
V F+ L + +++++PD +T Q E+ + + S AT IKV
Sbjct: 485 VVPFYARLVATLENVMPDLTTEIVTQLLEK--FRGFLQQKPSSATAIIKV 532
>AC084197-22|AAK68590.2| 1142|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 3 protein.
Length = 1142
Score = 28.3 bits (60), Expect = 7.1
Identities = 28/110 (25%), Positives = 53/110 (48%)
Frame = -1
Query: 665 MNKGDCFVLSLDNDIYVFVGEKAKNVEKLKAISFANQVRDQDHHGRGKVDIVDKYSSDVD 486
++K FVL LD+ + + ++A AI F + + ++ R ++D S +D
Sbjct: 432 VSKWQSFVLDLDHLVSKYSTDQA-------AIYFVSNLNNKGCRKRLVKLMIDPPPSRID 484
Query: 485 VQKFFTALGSGVKDLVPDESTGGDDQEFERNEASNVILSEVSDATGKIKV 336
V F+ L + +++++PD +T Q E+ + + S AT IKV
Sbjct: 485 VVPFYARLVATLENVMPDLTTEIVTQLLEK--FRGFLQQKPSSATAIIKV 532
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,038,254
Number of Sequences: 27780
Number of extensions: 362199
Number of successful extensions: 1099
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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